Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 EDDM3DP-201ENST00000554692 434 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 LINC00557-201ENST00000563184 1279 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC040174.2-201ENST00000602701 465 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AC074276.2-201ENST00000619891 348 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 MTND5P23-201ENST00000430812 1655 ntBASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC3Q9BQI4 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 OR8V1P-201ENST00000395193 873 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AC124944.2-201ENST00000429866 1242 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 NPM1P18-201ENST00000434232 732 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 RPL12P18-201ENST00000437175 325 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 HMGN2P25-201ENST00000486956 268 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AC108043.1-201ENST00000512696 574 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 SETP12-201ENST00000514068 805 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 SNORA70.11-201ENST00000515987 138 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 SNORA70.13-201ENST00000516116 138 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AC008147.3-201ENST00000548666 354 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AL451049.1-201ENST00000608672 497 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AC010632.3-201ENST00000611377 369 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AP000720.1-201ENST00000625091 483 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 NXF4-202ENST00000416098 1465 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.04□□□□□ -1.6
CCDC3Q9BQI4 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AC006206.1-201ENST00000544842 3387 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 OR9G4-201ENST00000302957 984 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 RNU6-1251P-201ENST00000364502 107 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 RNA5SP90-201ENST00000364801 99 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 OR13C3-201ENST00000374781 1108 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 CCNB2P1-201ENST00000399411 1150 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AC136624.1-201ENST00000400791 413 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 COX6B1P1-201ENST00000415962 213 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 GNG5P5-201ENST00000420444 220 ntBASIC5.03□□□□□ -1.6
CCDC3Q9BQI4 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms