Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS39Q96JC1 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS39Q96JC1 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.12□□□□□ -1.59
VPS39Q96JC1 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS39Q96JC1 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS39Q96JC1 AL731532.2-201ENST00000623542 1953 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 MAPK10-320ENST00000641462 6696 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 THAP12P5-201ENST00000405864 2275 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS39Q96JC1 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS39Q96JC1 RN7SKP113-201ENST00000363891 295 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 NUDT19P3-201ENST00000404698 555 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 EIF4A1P3-201ENST00000411521 244 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 CTSL3P-202ENST00000412179 788 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 AL590806.1-201ENST00000415818 853 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 AC013429.2-201ENST00000418798 781 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 NPM1P26-201ENST00000426339 738 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 RPS4XP16-201ENST00000427198 791 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 AL121776.1-201ENST00000429337 372 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS39Q96JC1 MTCYBP29-201ENST00000436327 1006 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 RPL35AP21-201ENST00000437667 333 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 ELOCP10-201ENST00000440624 327 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 MRPL35P2-201ENST00000448009 511 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS39Q96JC1 AC016724.1-201ENST00000453215 421 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 Z92846.1-201ENST00000456203 268 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 CCDC75P1-201ENST00000469247 791 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 RN7SL174P-201ENST00000475578 289 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 AC069304.1-201ENST00000491593 704 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 AC084033.1-201ENST00000550830 633 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS39Q96JC1 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS39Q96JC1 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS39Q96JC1 NDUFB4P11-201ENST00000560510 395 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 AC012146.2-201ENST00000576545 416 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 AC069307.1-201ENST00000602820 447 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 ELOCP34-201ENST00000604436 327 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS39Q96JC1 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS39Q96JC1 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS39Q96JC1 ASNSP1-201ENST00000518311 1939 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS39Q96JC1 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS39Q96JC1 AL451142.2-201ENST00000429076 2090 ntBASIC5.11□□□□□ -1.59
VPS39Q96JC1 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS39Q96JC1 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS39Q96JC1 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS39Q96JC1 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS39Q96JC1 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS39Q96JC1 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
VPS39Q96JC1 MIR600-201ENST00000385007 98 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS39Q96JC1 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS39Q96JC1 MIR1182-201ENST00000408363 97 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 AL391987.1-201ENST00000441025 200 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 GTF3AP5-201ENST00000442645 697 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS39Q96JC1 AC007386.1-201ENST00000455212 582 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 AC235565.1-201ENST00000456962 1325 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS39Q96JC1 RPL21P6-201ENST00000479171 504 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 RN7SL184P-201ENST00000488308 297 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 UBA52P3-201ENST00000491303 382 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 AC015864.1-201ENST00000496512 544 ntBASIC5.1□□□□□ -1.59
VPS39Q96JC1 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms