Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
SHMT2P34897 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHMT2P34897 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.85□□□□□ -1.63
SHMT2P34897 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
SHMT2P34897 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
SHMT2P34897 RNA5SP123-201ENST00000363244 119 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 SNORA58B-201ENST00000364259 136 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 SNORA70.10-201ENST00000384515 134 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHMT2P34897 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC4.85□□□□□ -1.63
SHMT2P34897 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.85□□□□□ -1.63
SHMT2P34897 NPM1P22-201ENST00000427761 952 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.85□□□□□ -1.63
SHMT2P34897 RPL35AP21-201ENST00000437667 333 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 PRPF38AP2-201ENST00000438179 851 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC4.85□□□□□ -1.63
SHMT2P34897 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.85□□□□□ -1.63
SHMT2P34897 TXNP5-201ENST00000441043 315 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 MTCO3P17-201ENST00000443775 513 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 TRY2P-201ENST00000448860 689 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 snoU13.20-201ENST00000459180 104 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 AP002371.1-201ENST00000463604 433 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 AC093270.2-201ENST00000486157 792 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 NDUFA5P12-201ENST00000503796 343 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 NDUFB5P1-201ENST00000508134 564 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 AC105031.1-201ENST00000518550 476 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.85□□□□□ -1.63
SHMT2P34897 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC4.85□□□□□ -1.63
SHMT2P34897 AC012339.2-201ENST00000523996 453 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 HNRNPRP2-201ENST00000528421 743 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.85□□□□□ -1.63
SHMT2P34897 EDDM3DP-201ENST00000554692 434 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.85□□□□□ -1.63
SHMT2P34897 TVP23CP2-201ENST00000571473 623 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.85□□□□□ -1.63
SHMT2P34897 AP005262.1-201ENST00000582646 997 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC4.85□□□□□ -1.63
SHMT2P34897 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.85□□□□□ -1.63
SHMT2P34897 AC005377.1-201ENST00000605126 456 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 AL356752.1-201ENST00000615844 593 ntBASIC4.85□□□□□ -1.63
SHMT2P34897 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHMT2P34897 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.85□□□□□ -1.63
SHMT2P34897 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHMT2P34897 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SHMT2P34897 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SHMT2P34897 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
SHMT2P34897 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
SHMT2P34897 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SHMT2P34897 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.84□□□□□ -1.63
SHMT2P34897 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.84□□□□□ -1.63
SHMT2P34897 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
SHMT2P34897 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SHMT2P34897 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SHMT2P34897 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.84□□□□□ -1.63
SHMT2P34897 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SHMT2P34897 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SHMT2P34897 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SHMT2P34897 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.84□□□□□ -1.63
SHMT2P34897 RN7SKP125-201ENST00000410481 302 ntBASIC4.84□□□□□ -1.63
SHMT2P34897 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.84□□□□□ -1.63
SHMT2P34897 CHEK2P3-201ENST00000416118 248 ntBASIC4.84□□□□□ -1.63
SHMT2P34897 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.84□□□□□ -1.63
SHMT2P34897 AL355994.1-201ENST00000424379 260 ntBASIC4.84□□□□□ -1.63
SHMT2P34897 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.84□□□□□ -1.63
SHMT2P34897 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.84□□□□□ -1.63
SHMT2P34897 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.84□□□□□ -1.63
SHMT2P34897 RPL12P3-201ENST00000440080 396 ntBASIC4.84□□□□□ -1.63
SHMT2P34897 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.84□□□□□ -1.63
SHMT2P34897 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.84□□□□□ -1.63
SHMT2P34897 HMGB1P4-201ENST00000455362 567 ntBASIC4.84□□□□□ -1.63
SHMT2P34897 RN7SL826P-201ENST00000479724 288 ntBASIC4.84□□□□□ -1.63
SHMT2P34897 AP001960.1-201ENST00000506494 658 ntBASIC4.84□□□□□ -1.63
SHMT2P34897 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SHMT2P34897 MTCO3P42-201ENST00000509488 518 ntBASIC4.84□□□□□ -1.63
SHMT2P34897 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.84□□□□□ -1.63
SHMT2P34897 MTCO3P39-201ENST00000514812 518 ntBASIC4.84□□□□□ -1.63
SHMT2P34897 AL671862.1-201ENST00000515851 349 ntBASIC4.84□□□□□ -1.63
SHMT2P34897 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.84□□□□□ -1.63
SHMT2P34897 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.84□□□□□ -1.63
SHMT2P34897 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.84□□□□□ -1.63
SHMT2P34897 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.84□□□□□ -1.63
SHMT2P34897 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC4.84□□□□□ -1.63
SHMT2P34897 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC4.84□□□□□ -1.63
SHMT2P34897 AC133644.2-201ENST00000608142 540 ntBASIC4.84□□□□□ -1.63
SHMT2P34897 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.84□□□□□ -1.63
SHMT2P34897 AC019206.1-201ENST00000621938 425 ntBASIC4.84□□□□□ -1.63
SHMT2P34897 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.84□□□□□ -1.63
SHMT2P34897 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
SHMT2P34897 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.84□□□□□ -1.63
SHMT2P34897 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
SHMT2P34897 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
SHMT2P34897 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SHMT2P34897 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
SHMT2P34897 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
SHMT2P34897 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHMT2P34897 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.83□□□□□ -1.64
SHMT2P34897 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHMT2P34897 ECM1P2-201ENST00000503354 1577 ntBASIC4.83□□□□□ -1.64
SHMT2P34897 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SHMT2P34897 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms