Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC135999.1-201ENST00000478962 479 ntBASIC5.18□□□□□ -1.58
APOEP02649 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.18□□□□□ -1.58
APOEP02649 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC5.18□□□□□ -1.58
APOEP02649 AC110775.1-201ENST00000513721 462 ntBASIC5.18□□□□□ -1.58
APOEP02649 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.18□□□□□ -1.58
APOEP02649 RNU6-1334P-201ENST00000516032 105 ntBASIC5.18□□□□□ -1.58
APOEP02649 HMGB1P19-201ENST00000517578 577 ntBASIC5.18□□□□□ -1.58
APOEP02649 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.18□□□□□ -1.58
APOEP02649 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.18□□□□□ -1.58
APOEP02649 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.18□□□□□ -1.58
APOEP02649 AC005000.1-201ENST00000536192 288 ntBASIC5.18□□□□□ -1.58
APOEP02649 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.18□□□□□ -1.58
APOEP02649 AC125612.1-201ENST00000547580 377 ntBASIC5.18□□□□□ -1.58
APOEP02649 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
APOEP02649 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.18□□□□□ -1.58
APOEP02649 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.18□□□□□ -1.58
APOEP02649 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.18□□□□□ -1.58
APOEP02649 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.18□□□□□ -1.58
APOEP02649 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC5.18□□□□□ -1.58
APOEP02649 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.18□□□□□ -1.58
APOEP02649 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.18□□□□□ -1.58
APOEP02649 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.18□□□□□ -1.58
APOEP02649 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
APOEP02649 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
APOEP02649 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
APOEP02649 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
APOEP02649 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
APOEP02649 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
APOEP02649 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.18□□□□□ -1.58
APOEP02649 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
APOEP02649 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.17□□□□□ -1.58
APOEP02649 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.17□□□□□ -1.58
APOEP02649 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
APOEP02649 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
APOEP02649 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
APOEP02649 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
APOEP02649 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
APOEP02649 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.17□□□□□ -1.58
APOEP02649 RN7SKP104-201ENST00000362605 328 ntBASIC5.17□□□□□ -1.58
APOEP02649 LRRC37BP1-201ENST00000398851 714 ntBASIC5.17□□□□□ -1.58
APOEP02649 AC013429.2-201ENST00000418798 781 ntBASIC5.17□□□□□ -1.58
APOEP02649 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.17□□□□□ -1.58
APOEP02649 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
APOEP02649 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.17□□□□□ -1.58
APOEP02649 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.17□□□□□ -1.58
APOEP02649 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.17□□□□□ -1.58
APOEP02649 PSMD10P3-201ENST00000437000 448 ntBASIC5.17□□□□□ -1.58
APOEP02649 AL450263.2-201ENST00000439400 589 ntBASIC5.17□□□□□ -1.58
APOEP02649 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.17□□□□□ -1.58
APOEP02649 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.17□□□□□ -1.58
APOEP02649 RPS6P2-201ENST00000454208 705 ntBASIC5.17□□□□□ -1.58
APOEP02649 AC090589.1-201ENST00000473109 362 ntBASIC5.17□□□□□ -1.58
APOEP02649 AC073073.1-201ENST00000493920 463 ntBASIC5.17□□□□□ -1.58
APOEP02649 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.17□□□□□ -1.58
APOEP02649 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC5.17□□□□□ -1.58
APOEP02649 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.17□□□□□ -1.58
APOEP02649 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.17□□□□□ -1.58
APOEP02649 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.17□□□□□ -1.58
APOEP02649 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.17□□□□□ -1.58
APOEP02649 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.17□□□□□ -1.58
APOEP02649 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC5.17□□□□□ -1.58
APOEP02649 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.17□□□□□ -1.58
APOEP02649 AGGF1P9-201ENST00000561884 913 ntBASIC5.17□□□□□ -1.58
APOEP02649 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.17□□□□□ -1.58
APOEP02649 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.17□□□□□ -1.58
APOEP02649 AC133644.2-201ENST00000608142 540 ntBASIC5.17□□□□□ -1.58
APOEP02649 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.17□□□□□ -1.58
APOEP02649 AC015914.2-201ENST00000618167 288 ntBASIC5.17□□□□□ -1.58
APOEP02649 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.17□□□□□ -1.58
APOEP02649 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.17□□□□□ -1.58
APOEP02649 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.17□□□□□ -1.58
APOEP02649 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
APOEP02649 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.17□□□□□ -1.58
APOEP02649 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.17□□□□□ -1.58
APOEP02649 AL022393.1-201ENST00000625142 1677 ntBASIC5.17□□□□□ -1.58
APOEP02649 Z95327.2-201ENST00000414579 1873 ntBASIC5.17□□□□□ -1.58
APOEP02649 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
APOEP02649 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
APOEP02649 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
APOEP02649 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.17□□□□□ -1.58
APOEP02649 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
APOEP02649 AC011447.7-201ENST00000624228 1590 ntBASIC5.16□□□□□ -1.58
APOEP02649 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
APOEP02649 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
APOEP02649 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
APOEP02649 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC5.16□□□□□ -1.58
APOEP02649 SNORA73.1-201ENST00000363107 205 ntBASIC5.16□□□□□ -1.58
APOEP02649 AL109941.1-201ENST00000401925 229 ntBASIC5.16□□□□□ -1.58
APOEP02649 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.16□□□□□ -1.58
APOEP02649 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
APOEP02649 AL691482.1-201ENST00000453255 87 ntBASIC5.16□□□□□ -1.58
APOEP02649 HIGD1AP8-201ENST00000453927 274 ntBASIC5.16□□□□□ -1.58
APOEP02649 AC093166.2-201ENST00000455969 1017 ntBASIC5.16□□□□□ -1.58
APOEP02649 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.16□□□□□ -1.58
APOEP02649 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.16□□□□□ -1.58
APOEP02649 AP001922.4-201ENST00000526967 290 ntBASIC5.16□□□□□ -1.58
APOEP02649 OR5AZ1P-201ENST00000527448 943 ntBASIC5.16□□□□□ -1.58
APOEP02649 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.16□□□□□ -1.58
APOEP02649 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.16□□□□□ -1.58
APOEP02649 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms