Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AC111000.6-201ENST00000514471 709 ntBASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 MRPL49P2-201ENST00000521066 465 ntBASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 MRPS21P9-201ENST00000571150 257 ntBASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
SHANK3Q9BYB0 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AC011447.7-201ENST00000624228 1590 ntBASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AMZ2P2-201ENST00000406819 1057 ntBASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 PHBP16-201ENST00000446318 950 ntBASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AL445567.2-201ENST00000618935 498 ntBASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 MIR6075-201ENST00000620782 95 ntBASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AP003400.2-201ENST00000624036 666 ntBASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AL592182.3-201ENST00000642132 3304 ntBASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AC135352.1-201ENST00000506173 1418 ntBASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 AC002525.1-201ENST00000624392 1622 ntBASIC6.18□□□□□ -1.42
SHANK3Q9BYB0 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 CR1-203ENST00000367051 7469 ntTSL 5 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 CR1-204ENST00000367052 7469 ntTSL 5 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 CR1-205ENST00000367053 7469 ntTSL 5 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 AC120338.1-201ENST00000625074 1541 ntBASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 SNORA71.2-201ENST00000364941 134 ntBASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 RCC2P2-201ENST00000422174 918 ntBASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 RPL21P126-201ENST00000470049 478 ntBASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 AC104763.1-201ENST00000475274 360 ntBASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 AC015795.1-201ENST00000513669 327 ntBASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 SNX18P3-202ENST00000565670 1750 ntBASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 AC034229.2-201ENST00000566945 2508 ntBASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC6.17□□□□□ -1.42
SHANK3Q9BYB0 SNORA9-201ENST00000384215 133 ntBASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 RPL7AP25-201ENST00000423357 805 ntBASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 RPS12P10-201ENST00000427031 377 ntBASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 RPL7L1P8-201ENST00000469911 741 ntBASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 IGLVIV-65-201ENST00000517313 360 ntBASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AC023632.4-201ENST00000517783 191 ntBASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 SNX18P1Y-201ENST00000616231 511 ntBASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SHANK3Q9BYB0 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms