Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXF1Q12946 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXF1Q12946 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXF1Q12946 AL022393.1-201ENST00000625142 1677 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
FOXF1Q12946 AC120036.2-201ENST00000509729 1474 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.39□□□□□ -1.71
FOXF1Q12946 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
FOXF1Q12946 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.39□□□□□ -1.71
FOXF1Q12946 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
FOXF1Q12946 U3.30-201ENST00000391308 210 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 RN7SKP125-201ENST00000410481 302 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 RPS26P13-201ENST00000419030 330 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 OR5M12P-201ENST00000423388 929 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 VN1R54P-201ENST00000435210 1049 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 OR52J1P-201ENST00000450596 932 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 RPS3AP41-201ENST00000462701 778 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 RN7SL610P-201ENST00000463845 291 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 RPL7P16-201ENST00000479738 738 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 AC008410.1-201ENST00000483777 339 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
FOXF1Q12946 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXF1Q12946 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.39□□□□□ -1.71
FOXF1Q12946 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXF1Q12946 RNU6-709P-201ENST00000517257 104 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.39□□□□□ -1.71
FOXF1Q12946 EIF4A2P5-201ENST00000529914 499 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.39□□□□□ -1.71
FOXF1Q12946 EDDM3DP-201ENST00000554692 434 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 CYCSP40-201ENST00000575927 294 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 DPRXP4-201ENST00000578053 568 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 AC011453.2-201ENST00000603737 729 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 AL031320.1-201ENST00000604177 357 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 AL445528.2-201ENST00000620582 470 ntBASIC4.39□□□□□ -1.71
FOXF1Q12946 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.39□□□□□ -1.71
FOXF1Q12946 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
FOXF1Q12946 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXF1Q12946 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
FOXF1Q12946 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.39□□□□□ -1.71
FOXF1Q12946 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXF1Q12946 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXF1Q12946 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
FOXF1Q12946 AL731566.1-201ENST00000620490 1937 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXF1Q12946 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXF1Q12946 AL672167.1-204ENST00000641875 3017 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXF1Q12946 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
FOXF1Q12946 AL449283.1-201ENST00000602631 3403 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXF1Q12946 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.38□□□□□ -1.71
FOXF1Q12946 RN7SKP149-201ENST00000363008 344 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXF1Q12946 GAPDHP15-201ENST00000398586 975 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 RPL10P10-201ENST00000403509 664 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 AL359643.1-201ENST00000404109 423 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXF1Q12946 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXF1Q12946 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXF1Q12946 AC104837.2-201ENST00000427236 424 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXF1Q12946 LYPLA1P1-201ENST00000434514 622 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXF1Q12946 OTX2P1-201ENST00000450956 354 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 AURKAPS2-201ENST00000454983 333 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXF1Q12946 AC063943.1-201ENST00000465434 453 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 RN7SL558P-201ENST00000497468 299 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXF1Q12946 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.38□□□□□ -1.71
FOXF1Q12946 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXF1Q12946 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.38□□□□□ -1.71
FOXF1Q12946 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXF1Q12946 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXF1Q12946 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXF1Q12946 MIR3934-201ENST00000579806 107 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.38□□□□□ -1.71
FOXF1Q12946 CR381572.2-201ENST00000624852 397 ntBASIC4.38□□□□□ -1.71
FOXF1Q12946 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXF1Q12946 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXF1Q12946 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
FOXF1Q12946 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.38□□□□□ -1.71
FOXF1Q12946 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXF1Q12946 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.38□□□□□ -1.71
FOXF1Q12946 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
FOXF1Q12946 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
FOXF1Q12946 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
FOXF1Q12946 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
FOXF1Q12946 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
FOXF1Q12946 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
FOXF1Q12946 RNA5SP191-201ENST00000362585 102 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
FOXF1Q12946 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.37□□□□□ -1.71
FOXF1Q12946 AC114755.2-201ENST00000413520 361 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXF1Q12946 RGS17P1-201ENST00000423358 553 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 AL590762.4-201ENST00000425885 253 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 HSPE1P27-201ENST00000430808 296 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 RPS17P8-201ENST00000434525 335 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 GTF3AP5-201ENST00000442645 697 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms