Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC2.87□□□□□ -1.95
HSPG2P98160 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 LSAMP-205ENST00000490035 9446 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC2.87□□□□□ -1.95
HSPG2P98160 TCEA1P4-201ENST00000415066 844 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 E2F6P2-201ENST00000420708 748 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 UBE2DNL-203ENST00000474922 222 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC2.87□□□□□ -1.95
HSPG2P98160 AC093249.4-201ENST00000564755 259 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 AL354984.3-201ENST00000604803 325 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 AL683813.2-201ENST00000605245 502 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
HSPG2P98160 PRICKLE2-204ENST00000564377 8032 ntAPPRIS P2 TSL 5 BASIC2.87□□□□□ -1.95
HSPG2P98160 AC018628.1-201ENST00000624147 3819 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
HSPG2P98160 AL592182.3-201ENST00000642132 3304 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 FSD2-201ENST00000334574 6418 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
HSPG2P98160 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HSPG2P98160 AL158163.1-201ENST00000603915 1649 ntBASIC2.87□□□□□ -1.95
HSPG2P98160 AC007382.1-201ENST00000624376 2618 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC2.86□□□□□ -1.95
HSPG2P98160 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
HSPG2P98160 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC2.86□□□□□ -1.95
HSPG2P98160 ARAFP2-201ENST00000440565 559 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 DHFRP3-201ENST00000455595 559 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 RPS7P7-201ENST00000463499 571 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC2.86□□□□□ -1.95
HSPG2P98160 RN7SKP67-201ENST00000515905 235 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 RN7SKP248-201ENST00000516278 305 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC2.86□□□□□ -1.95
HSPG2P98160 NDUFB4P11-201ENST00000560510 395 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 RN7SL290P-201ENST00000578661 300 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC2.86□□□□□ -1.95
HSPG2P98160 ICE2P1-201ENST00000512800 1849 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC2.86□□□□□ -1.95
HSPG2P98160 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 RN7SKP153-201ENST00000365026 316 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 MIR183-201ENST00000384958 110 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC2.86□□□□□ -1.95
HSPG2P98160 CYCSP32-201ENST00000440548 321 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC2.86□□□□□ -1.95
HSPG2P98160 AC019206.1-201ENST00000621938 425 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 AL596275.2-208ENST00000641192 594 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
HSPG2P98160 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 AC125257.1-201ENST00000560400 2930 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC2.86□□□□□ -1.95
HSPG2P98160 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.86□□□□□ -1.95
HSPG2P98160 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
HSPG2P98160 AC025574.1-201ENST00000554784 1653 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC2.86□□□□□ -1.95
HSPG2P98160 AC108467.2-201ENST00000617640 1597 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC2.86□□□□□ -1.95
HSPG2P98160 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 OR1F12-201ENST00000402365 945 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC2.86□□□□□ -1.95
HSPG2P98160 AC236972.1-201ENST00000433225 199 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 MTND2P40-201ENST00000436718 841 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 PLGLA-201ENST00000465668 449 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 AC105137.1-201ENST00000484355 562 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 AL357559.1-201ENST00000622228 274 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 MALAT1-202ENST00000534336 8708 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC2.86□□□□□ -1.95
HSPG2P98160 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC2.86□□□□□ -1.95
HSPG2P98160 MAPK10-349ENST00000641767 3661 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC2.86□□□□□ -1.95
HSPG2P98160 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC2.86□□□□□ -1.95
HSPG2P98160 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC2.86□□□□□ -1.95
HSPG2P98160 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC2.86□□□□□ -1.95
HSPG2P98160 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HSPG2P98160 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC2.86□□□□□ -1.95
HSPG2P98160 MRPL50P1-201ENST00000431951 384 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 CYCSP43-201ENST00000438233 310 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 AL132838.2-201ENST00000492041 314 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC2.86□□□□□ -1.95
HSPG2P98160 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC2.86□□□□□ -1.95
HSPG2P98160 AC112230.1-201ENST00000604342 547 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 AL137843.1-201ENST00000605078 385 ntBASIC2.86□□□□□ -1.95
HSPG2P98160 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC2.86□□□□□ -1.95
HSPG2P98160 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms