Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXD4P09016 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXD4P09016 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXD4P09016 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXD4P09016 AL161722.2-201ENST00000434731 981 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXD4P09016 AC092647.3-201ENST00000443044 633 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXD4P09016 AL500527.1-201ENST00000448532 255 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXD4P09016 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXD4P09016 RPS6P2-201ENST00000454208 705 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXD4P09016 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXD4P09016 AP000797.2-201ENST00000475768 606 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 AC020779.1-201ENST00000478757 796 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 RPS24P16-201ENST00000497294 392 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXD4P09016 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXD4P09016 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXD4P09016 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXD4P09016 EIF3KP3-201ENST00000514461 639 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXD4P09016 OR4A17P-201ENST00000526032 904 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 OR8G3P-201ENST00000533406 921 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXD4P09016 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXD4P09016 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
HOXD4P09016 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXD4P09016 TMF1P1-201ENST00000576058 373 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXD4P09016 MIR4480-201ENST00000582492 71 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXD4P09016 AC005084.1-201ENST00000605160 304 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 AL139124.1-201ENST00000609123 421 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 AC073575.2-201ENST00000614212 627 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 AC015871.5-202ENST00000623252 701 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 AC020923.1-201ENST00000624021 917 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC4.75□□□□□ -1.65
HOXD4P09016 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
HOXD4P09016 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXD4P09016 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXD4P09016 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXD4P09016 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
HOXD4P09016 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXD4P09016 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
HOXD4P09016 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXD4P09016 SMG1P4-204ENST00000523028 4131 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXD4P09016 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXD4P09016 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXD4P09016 AP001273.1-201ENST00000624493 3152 ntBASIC4.75□□□□□ -1.65
HOXD4P09016 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
HOXD4P09016 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
HOXD4P09016 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXD4P09016 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXD4P09016 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.74□□□□□ -1.65
HOXD4P09016 AC007996.1-201ENST00000620414 2821 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
HOXD4P09016 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 MIR600-201ENST00000385007 98 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
HOXD4P09016 OR8V1P-201ENST00000395193 873 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 RPL10P10-201ENST00000403509 664 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXD4P09016 RN7SKP126-201ENST00000411143 300 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 RPSAP35-201ENST00000413753 818 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXD4P09016 COX5BP7-201ENST00000414780 274 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.74□□□□□ -1.65
HOXD4P09016 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 MTATP6P11-201ENST00000428071 670 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.74□□□□□ -1.65
HOXD4P09016 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXD4P09016 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXD4P09016 AC073465.2-201ENST00000440938 498 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC4.74□□□□□ -1.65
HOXD4P09016 MTCYBP14-201ENST00000457471 715 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 AC097484.1-201ENST00000471148 389 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 AC091544.1-201ENST00000484702 348 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 AC007686.1-201ENST00000488511 463 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 AC021106.1-201ENST00000509020 1058 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXD4P09016 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXD4P09016 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXD4P09016 AC098976.1-201ENST00000513014 541 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 RN7SKP260-201ENST00000516907 149 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 RNA5SP373-201ENST00000517271 95 ntBASIC4.74□□□□□ -1.65
HOXD4P09016 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXD4P09016 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.74□□□□□ -1.65
HOXD4P09016 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXD4P09016 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXD4P09016 EDDM3DP-201ENST00000554692 434 ntBASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms