Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SNORA70G-201ENST00000383923 142 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 MIR152-201ENST00000385212 87 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AL512422.1-201ENST00000407033 553 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 MTERF4-205ENST00000407095 799 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AL023807.1-201ENST00000407932 359 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 METTL5-204ENST00000409340 472 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC007384.1-202ENST00000417026 891 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 NANOGP6-201ENST00000429190 847 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC073464.1-201ENST00000429823 534 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC000111.3-201ENST00000433478 193 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC007064.2-201ENST00000442403 500 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AL034399.1-201ENST00000451535 380 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 BX322784.1-201ENST00000455793 1077 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 RPLP0P1-201ENST00000457002 361 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 CEACAMP3-202ENST00000483806 638 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 RPS4XP23-201ENST00000487801 237 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC106760.2-201ENST00000504159 619 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC093664.1-201ENST00000511779 289 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC024589.1-201ENST00000512207 263 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 RPS23-208ENST00000512493 443 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AP003467.2-201ENST00000520175 319 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC010247.1-201ENST00000527895 759 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 OR5AP1P-201ENST00000529730 940 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC126177.6-201ENST00000550420 1009 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 RN7SL697P-201ENST00000582484 299 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 HMGN1P30-201ENST00000589286 268 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 ZNF397-211ENST00000592264 1104 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC063977.5-201ENST00000601044 974 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 BBIP1P1-201ENST00000602999 279 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC063962.1-201ENST00000608199 521 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AL365181.4-201ENST00000609800 547 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC006338.1-201ENST00000618453 749 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 TSHZ2-205ENST00000626626 670 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 JAML-213ENST00000640745 951 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AC034111.1-201ENST00000562143 3770 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 KYNUP2-201ENST00000582280 1329 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC092079.1-201ENST00000558620 1985 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 Y_RNA.70-201ENST00000362886 110 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 U8.3-201ENST00000363321 132 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 RNU6-694P-201ENST00000364071 147 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 RNA5SP172-201ENST00000365061 118 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 SNORA70.5-201ENST00000365519 135 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 MIR205HG-201ENST00000366437 704 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 FAM107B-203ENST00000378462 692 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 RNU6-780P-201ENST00000391030 104 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 ERMN-202ENST00000409216 746 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 RNU4-55P-201ENST00000410731 137 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 MTCO1P17-201ENST00000411522 491 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AL133384.1-201ENST00000412744 351 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC009237.5-201ENST00000414271 501 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 AC004690.1-201ENST00000418216 328 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC140Q96MF4 ANXA2P2-201ENST00000435128 1020 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 LDHAP2-201ENST00000437325 985 ntBASIC5.48□□□□□ -1.53
CCDC140Q96MF4 TUBB4BP6-201ENST00000437576 479 ntBASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms