Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CACYBPP1-201ENST00000438592 684 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AL356121.1-201ENST00000442911 156 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC6.2□□□□□ -1.42
RNF4P78317 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC6.2□□□□□ -1.42
RNF4P78317 AL034418.1-201ENST00000448675 860 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC6.2□□□□□ -1.42
RNF4P78317 BZW1P1-201ENST00000454901 1240 ntBASIC6.2□□□□□ -1.42
RNF4P78317 RPL31P58-201ENST00000469001 379 ntBASIC6.2□□□□□ -1.42
RNF4P78317 RN7SL612P-201ENST00000497704 295 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC6.2□□□□□ -1.42
RNF4P78317 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC6.2□□□□□ -1.42
RNF4P78317 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC6.2□□□□□ -1.42
RNF4P78317 RPL7L1P13-201ENST00000511702 739 ntBASIC6.2□□□□□ -1.42
RNF4P78317 OR52H2P-201ENST00000514607 902 ntBASIC6.2□□□□□ -1.42
RNF4P78317 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AC008802.1-201ENST00000519121 791 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC6.2□□□□□ -1.42
RNF4P78317 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC6.2□□□□□ -1.42
RNF4P78317 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC6.2□□□□□ -1.42
RNF4P78317 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC6.2□□□□□ -1.42
RNF4P78317 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC6.2□□□□□ -1.42
RNF4P78317 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC6.2□□□□□ -1.42
RNF4P78317 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.2□□□□□ -1.42
RNF4P78317 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC6.2□□□□□ -1.42
RNF4P78317 POLR2KP1-201ENST00000553226 168 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AC005519.1-201ENST00000554490 601 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC6.2□□□□□ -1.42
RNF4P78317 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC6.2□□□□□ -1.42
RNF4P78317 SYPL1P2-201ENST00000582878 727 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC6.2□□□□□ -1.42
RNF4P78317 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC6.2□□□□□ -1.42
RNF4P78317 RPL29P33-201ENST00000587474 316 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AC010487.1-201ENST00000594408 1172 ntBASIC6.2□□□□□ -1.42
RNF4P78317 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC6.2□□□□□ -1.42
RNF4P78317 AC012175.1-201ENST00000603755 531 ntBASIC6.2□□□□□ -1.42
RNF4P78317 IMMP1LP1-201ENST00000605170 488 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AC004067.1-201ENST00000608733 700 ntBASIC6.2□□□□□ -1.42
RNF4P78317 MESTIT1_2.1-201ENST00000616328 235 ntBASIC6.2□□□□□ -1.42
RNF4P78317 MIR7854-201ENST00000620068 65 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AC211486.4-201ENST00000621495 113 ntBASIC6.2□□□□□ -1.42
RNF4P78317 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC6.2□□□□□ -1.42
RNF4P78317 AL354702.2-202ENST00000641481 890 ntBASIC6.2□□□□□ -1.42
RNF4P78317 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC6.2□□□□□ -1.42
RNF4P78317 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 UGT2B26P-201ENST00000508672 1613 ntBASIC6.2□□□□□ -1.42
RNF4P78317 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC6.2□□□□□ -1.42
RNF4P78317 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.2□□□□□ -1.42
RNF4P78317 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
RNF4P78317 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
RNF4P78317 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.19□□□□□ -1.42
RNF4P78317 AC135352.1-201ENST00000506173 1418 ntBASIC6.19□□□□□ -1.42
RNF4P78317 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.19□□□□□ -1.42
RNF4P78317 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC6.19□□□□□ -1.42
RNF4P78317 AC034229.2-201ENST00000566945 2508 ntBASIC6.19□□□□□ -1.42
RNF4P78317 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
RNF4P78317 RN7SKP184-201ENST00000362348 333 ntBASIC6.19□□□□□ -1.42
RNF4P78317 SNORA38B-201ENST00000363524 131 ntBASIC6.19□□□□□ -1.42
RNF4P78317 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 AL034417.1-201ENST00000399343 800 ntBASIC6.19□□□□□ -1.42
RNF4P78317 NPM1P38-201ENST00000403835 865 ntBASIC6.19□□□□□ -1.42
RNF4P78317 MTCYBP36-201ENST00000404146 440 ntBASIC6.19□□□□□ -1.42
RNF4P78317 OR51A3P-201ENST00000413596 924 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AC245052.5-201ENST00000416320 649 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC6.19□□□□□ -1.42
RNF4P78317 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC6.19□□□□□ -1.42
RNF4P78317 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC6.19□□□□□ -1.42
RNF4P78317 AC069154.1-201ENST00000432914 542 ntBASIC6.19□□□□□ -1.42
RNF4P78317 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 DNAJC19P4-201ENST00000440115 345 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC6.19□□□□□ -1.42
RNF4P78317 UBBP5-201ENST00000446970 266 ntBASIC6.19□□□□□ -1.42
RNF4P78317 VN1R10P-201ENST00000447106 875 ntBASIC6.19□□□□□ -1.42
RNF4P78317 MGAT2P1-201ENST00000449718 797 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AL445991.1-201ENST00000450381 475 ntBASIC6.19□□□□□ -1.42
RNF4P78317 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 HMGN2P25-201ENST00000486956 268 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC6.19□□□□□ -1.42
RNF4P78317 AL358832.1-201ENST00000497800 389 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC6.19□□□□□ -1.42
RNF4P78317 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC6.19□□□□□ -1.42
RNF4P78317 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC6.19□□□□□ -1.42
RNF4P78317 RNU6-314P-201ENST00000516574 104 ntBASIC6.19□□□□□ -1.42
RNF4P78317 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC6.19□□□□□ -1.42
RNF4P78317 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC6.19□□□□□ -1.42
RNF4P78317 IGHV3-32-201ENST00000519182 355 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC6.19□□□□□ -1.42
RNF4P78317 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC6.19□□□□□ -1.42
RNF4P78317 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC6.19□□□□□ -1.42
RNF4P78317 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC6.19□□□□□ -1.42
RNF4P78317 AL121579.1-201ENST00000555129 305 ntBASIC6.19□□□□□ -1.42
RNF4P78317 ZNF519P2-201ENST00000557032 169 ntBASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms