Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.84□□□□□ -1.64
SOX3P41225 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.83□□□□□ -1.64
SOX3P41225 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.83□□□□□ -1.64
SOX3P41225 AC000374.1-201ENST00000434698 1745 ntBASIC4.83□□□□□ -1.64
SOX3P41225 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SOX3P41225 AC093591.2-201ENST00000565254 3843 ntBASIC4.83□□□□□ -1.64
SOX3P41225 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.83□□□□□ -1.64
SOX3P41225 AC068870.3-201ENST00000625077 2536 ntBASIC4.83□□□□□ -1.64
SOX3P41225 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.83□□□□□ -1.64
SOX3P41225 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.83□□□□□ -1.64
SOX3P41225 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SOX3P41225 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.83□□□□□ -1.64
SOX3P41225 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SOX3P41225 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SOX3P41225 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SOX3P41225 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
SOX3P41225 U3.3-201ENST00000362986 216 ntBASIC4.83□□□□□ -1.64
SOX3P41225 SNORA74A-201ENST00000364089 198 ntBASIC4.83□□□□□ -1.64
SOX3P41225 MIR600-201ENST00000385007 98 ntBASIC4.83□□□□□ -1.64
SOX3P41225 MIR765-201ENST00000390226 114 ntBASIC4.83□□□□□ -1.64
SOX3P41225 UBE2V1P15-201ENST00000407776 448 ntBASIC4.83□□□□□ -1.64
SOX3P41225 U3.36-201ENST00000408418 213 ntBASIC4.83□□□□□ -1.64
SOX3P41225 RN7SKP213-201ENST00000410746 298 ntBASIC4.83□□□□□ -1.64
SOX3P41225 RPL23AP27-201ENST00000415161 451 ntBASIC4.83□□□□□ -1.64
SOX3P41225 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.83□□□□□ -1.64
SOX3P41225 MTND4LP14-201ENST00000429447 288 ntBASIC4.83□□□□□ -1.64
SOX3P41225 AC124944.2-201ENST00000429866 1242 ntBASIC4.83□□□□□ -1.64
SOX3P41225 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.83□□□□□ -1.64
SOX3P41225 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC4.83□□□□□ -1.64
SOX3P41225 AL691517.1-201ENST00000440833 1235 ntBASIC4.83□□□□□ -1.64
SOX3P41225 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.83□□□□□ -1.64
SOX3P41225 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.83□□□□□ -1.64
SOX3P41225 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.83□□□□□ -1.64
SOX3P41225 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC4.83□□□□□ -1.64
SOX3P41225 RN7SL808P-201ENST00000496066 299 ntBASIC4.83□□□□□ -1.64
SOX3P41225 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC4.83□□□□□ -1.64
SOX3P41225 AK4P6-201ENST00000505168 528 ntBASIC4.83□□□□□ -1.64
SOX3P41225 PCNAP1-201ENST00000505363 709 ntBASIC4.83□□□□□ -1.64
SOX3P41225 FTH1P11-201ENST00000517577 551 ntBASIC4.83□□□□□ -1.64
SOX3P41225 AC012400.1-201ENST00000518452 381 ntBASIC4.83□□□□□ -1.64
SOX3P41225 AC020937.1-201ENST00000519677 1013 ntBASIC4.83□□□□□ -1.64
SOX3P41225 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.83□□□□□ -1.64
SOX3P41225 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.83□□□□□ -1.64
SOX3P41225 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SOX3P41225 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SOX3P41225 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SOX3P41225 AL121839.1-201ENST00000556233 1185 ntBASIC4.83□□□□□ -1.64
SOX3P41225 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SOX3P41225 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC4.83□□□□□ -1.64
SOX3P41225 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
SOX3P41225 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC4.83□□□□□ -1.64
SOX3P41225 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.83□□□□□ -1.64
SOX3P41225 AC005014.3-201ENST00000605985 190 ntBASIC4.83□□□□□ -1.64
SOX3P41225 AL445222.1-201ENST00000607259 628 ntBASIC4.83□□□□□ -1.64
SOX3P41225 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.83□□□□□ -1.64
SOX3P41225 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
SOX3P41225 AC006453.5-201ENST00000636451 619 ntBASIC4.83□□□□□ -1.64
SOX3P41225 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.83□□□□□ -1.64
SOX3P41225 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.83□□□□□ -1.64
SOX3P41225 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SOX3P41225 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.83□□□□□ -1.64
SOX3P41225 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SOX3P41225 AC097063.1-201ENST00000426714 1797 ntBASIC4.83□□□□□ -1.64
SOX3P41225 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SOX3P41225 AL672167.1-204ENST00000641875 3017 ntBASIC4.83□□□□□ -1.64
SOX3P41225 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.82□□□□□ -1.64
SOX3P41225 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.82□□□□□ -1.64
SOX3P41225 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
SOX3P41225 AP005432.1-201ENST00000580891 3485 ntBASIC4.82□□□□□ -1.64
SOX3P41225 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SOX3P41225 MTHFD2P5-201ENST00000320415 844 ntBASIC4.82□□□□□ -1.64
SOX3P41225 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SOX3P41225 Y_RNA.110-201ENST00000363220 99 ntBASIC4.82□□□□□ -1.64
SOX3P41225 OR6K3-202ENST00000368146 996 ntBASIC4.82□□□□□ -1.64
SOX3P41225 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SOX3P41225 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SOX3P41225 PCNPP4-201ENST00000414817 517 ntBASIC4.82□□□□□ -1.64
SOX3P41225 AC104333.2-201ENST00000422630 192 ntBASIC4.82□□□□□ -1.64
SOX3P41225 EI24P4-201ENST00000423683 1078 ntBASIC4.82□□□□□ -1.64
SOX3P41225 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.82□□□□□ -1.64
SOX3P41225 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.82□□□□□ -1.64
SOX3P41225 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.82□□□□□ -1.64
SOX3P41225 MTND6P5-201ENST00000448266 512 ntBASIC4.82□□□□□ -1.64
SOX3P41225 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC4.82□□□□□ -1.64
SOX3P41225 CBX1P5-201ENST00000475330 559 ntBASIC4.82□□□□□ -1.64
SOX3P41225 BX284632.1-201ENST00000478218 541 ntBASIC4.82□□□□□ -1.64
SOX3P41225 AC022133.1-201ENST00000490961 571 ntBASIC4.82□□□□□ -1.64
SOX3P41225 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.82□□□□□ -1.64
SOX3P41225 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC4.82□□□□□ -1.64
SOX3P41225 OR8A2P-201ENST00000528631 952 ntBASIC4.82□□□□□ -1.64
SOX3P41225 AC068993.1-201ENST00000546724 589 ntBASIC4.82□□□□□ -1.64
SOX3P41225 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC4.82□□□□□ -1.64
SOX3P41225 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC4.82□□□□□ -1.64
SOX3P41225 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.82□□□□□ -1.64
SOX3P41225 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.82□□□□□ -1.64
SOX3P41225 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.82□□□□□ -1.64
SOX3P41225 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.82□□□□□ -1.64
SOX3P41225 AC006116.3-201ENST00000592968 361 ntBASIC4.82□□□□□ -1.64
SOX3P41225 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SOX3P41225 AC009597.2-201ENST00000604659 592 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms