Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.17□□□□□ -1.58
MSH3P20585 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.17□□□□□ -1.58
MSH3P20585 RNA5SP34-201ENST00000516887 130 ntBASIC5.17□□□□□ -1.58
MSH3P20585 AC090022.1-201ENST00000546569 311 ntBASIC5.17□□□□□ -1.58
MSH3P20585 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC5.17□□□□□ -1.58
MSH3P20585 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH3P20585 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH3P20585 AC006349.1-201ENST00000555526 235 ntBASIC5.17□□□□□ -1.58
MSH3P20585 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH3P20585 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH3P20585 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC5.17□□□□□ -1.58
MSH3P20585 AC027281.1-201ENST00000574178 758 ntBASIC5.17□□□□□ -1.58
MSH3P20585 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.17□□□□□ -1.58
MSH3P20585 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.17□□□□□ -1.58
MSH3P20585 AC095055.1-201ENST00000603472 1113 ntBASIC5.17□□□□□ -1.58
MSH3P20585 AC008814.1-201ENST00000603797 406 ntBASIC5.17□□□□□ -1.58
MSH3P20585 AL158211.2-201ENST00000607282 395 ntBASIC5.17□□□□□ -1.58
MSH3P20585 AC135803.1-201ENST00000608748 565 ntBASIC5.17□□□□□ -1.58
MSH3P20585 AL512624.1-201ENST00000613638 469 ntBASIC5.17□□□□□ -1.58
MSH3P20585 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH3P20585 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH3P20585 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH3P20585 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH3P20585 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSH3P20585 AC235565.1-201ENST00000456962 1325 ntBASIC5.17□□□□□ -1.58
MSH3P20585 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSH3P20585 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.17□□□□□ -1.58
MSH3P20585 CDC27P2-201ENST00000425026 1922 ntBASIC5.17□□□□□ -1.58
MSH3P20585 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSH3P20585 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.16□□□□□ -1.58
MSH3P20585 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
MSH3P20585 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.16□□□□□ -1.58
MSH3P20585 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.16□□□□□ -1.58
MSH3P20585 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
MSH3P20585 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.16□□□□□ -1.58
MSH3P20585 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSH3P20585 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
MSH3P20585 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSH3P20585 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSH3P20585 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSH3P20585 SNORA17.1-201ENST00000362945 126 ntBASIC5.16□□□□□ -1.58
MSH3P20585 U3.2-201ENST00000362981 210 ntBASIC5.16□□□□□ -1.58
MSH3P20585 RNU6-249P-201ENST00000363016 102 ntBASIC5.16□□□□□ -1.58
MSH3P20585 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
MSH3P20585 RNU6-171P-201ENST00000384354 107 ntBASIC5.16□□□□□ -1.58
MSH3P20585 RN7SKP126-201ENST00000411143 300 ntBASIC5.16□□□□□ -1.58
MSH3P20585 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.16□□□□□ -1.58
MSH3P20585 MTND4LP14-201ENST00000429447 288 ntBASIC5.16□□□□□ -1.58
MSH3P20585 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.16□□□□□ -1.58
MSH3P20585 AC021660.1-201ENST00000465006 554 ntBASIC5.16□□□□□ -1.58
MSH3P20585 AC009127.1-201ENST00000467090 155 ntBASIC5.16□□□□□ -1.58
MSH3P20585 RPS18P6-201ENST00000476880 458 ntBASIC5.16□□□□□ -1.58
MSH3P20585 RN7SL814P-201ENST00000487715 300 ntBASIC5.16□□□□□ -1.58
MSH3P20585 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.16□□□□□ -1.58
MSH3P20585 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.16□□□□□ -1.58
MSH3P20585 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
MSH3P20585 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.16□□□□□ -1.58
MSH3P20585 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSH3P20585 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.16□□□□□ -1.58
MSH3P20585 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.16□□□□□ -1.58
MSH3P20585 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.16□□□□□ -1.58
MSH3P20585 AC098483.2-201ENST00000603158 454 ntBASIC5.16□□□□□ -1.58
MSH3P20585 AC024933.1-201ENST00000608472 348 ntBASIC5.16□□□□□ -1.58
MSH3P20585 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
MSH3P20585 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.16□□□□□ -1.58
MSH3P20585 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSH3P20585 AL590763.1-201ENST00000398297 1545 ntBASIC5.16□□□□□ -1.58
MSH3P20585 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
MSH3P20585 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.16□□□□□ -1.58
MSH3P20585 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSH3P20585 CR788268.1-201ENST00000603931 1809 ntBASIC5.16□□□□□ -1.58
MSH3P20585 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.15□□□□□ -1.58
MSH3P20585 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.58
MSH3P20585 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
MSH3P20585 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
MSH3P20585 ADAM5-202ENST00000399789 1942 ntBASIC5.15□□□□□ -1.58
MSH3P20585 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
MSH3P20585 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
MSH3P20585 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.15□□□□□ -1.58
MSH3P20585 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSH3P20585 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
MSH3P20585 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC5.15□□□□□ -1.59
MSH3P20585 RNU4-39P-201ENST00000362455 127 ntBASIC5.15□□□□□ -1.59
MSH3P20585 SNORA27.3-201ENST00000364937 134 ntBASIC5.15□□□□□ -1.59
MSH3P20585 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSH3P20585 RNU1-74P-201ENST00000384108 171 ntBASIC5.15□□□□□ -1.59
MSH3P20585 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.15□□□□□ -1.59
MSH3P20585 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
MSH3P20585 RPL12P9-201ENST00000412942 488 ntBASIC5.15□□□□□ -1.59
MSH3P20585 AC013410.2-201ENST00000422627 201 ntBASIC5.15□□□□□ -1.59
MSH3P20585 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSH3P20585 AL139148.1-201ENST00000427122 680 ntBASIC5.15□□□□□ -1.59
MSH3P20585 CNOT7P2-201ENST00000441051 832 ntBASIC5.15□□□□□ -1.59
MSH3P20585 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.15□□□□□ -1.59
MSH3P20585 TXNP2-201ENST00000443918 295 ntBASIC5.15□□□□□ -1.59
MSH3P20585 AL163193.1-201ENST00000444895 788 ntBASIC5.15□□□□□ -1.59
MSH3P20585 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.15□□□□□ -1.59
MSH3P20585 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.15□□□□□ -1.59
MSH3P20585 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.15□□□□□ -1.59
MSH3P20585 AC025768.1-201ENST00000510057 267 ntBASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms