Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
DKK3Q9UBP4 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AL591135.1-201ENST00000401578 5914 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 RNA5SP46-201ENST00000362370 120 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 GNG5P2-201ENST00000372054 207 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AL049545.1-201ENST00000401856 572 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AP002530.1-201ENST00000405705 684 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 RN7SKP286-201ENST00000410894 299 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC073410.1-201ENST00000435125 589 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 RPS7P2-201ENST00000435134 607 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 RPS3AP38-201ENST00000435889 763 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC002504.1-201ENST00000438281 691 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 ARF4P4-201ENST00000439608 520 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 MTCO1P53-201ENST00000441633 699 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 MTND2P22-201ENST00000444325 1033 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AL358794.1-201ENST00000445689 381 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 RPL36AP39-201ENST00000445859 318 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 Z73417.1-201ENST00000447373 778 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 OR7E116P-201ENST00000448529 957 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AL591363.1-201ENST00000450091 483 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 TPT1P1-201ENST00000458495 518 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 RPL7AP10-201ENST00000481016 791 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 RPL32P33-201ENST00000487023 394 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 RNU6-276P-201ENST00000516114 96 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AP001804.2-201ENST00000533932 910 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AL512310.9-201ENST00000553311 948 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 CSNK1A1P1-202ENST00000563423 981 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 MIR4675-201ENST00000577898 77 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 OR7E18P-201ENST00000592589 702 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC245036.5-201ENST00000596330 847 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC063977.5-201ENST00000601044 974 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC002487.1-201ENST00000604565 994 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 NANOGP3-201ENST00000605855 286 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC064807.4-201ENST00000607201 407 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 RNU4-5P-201ENST00000607255 135 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC211433.2-201ENST00000608433 387 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AP002791.1-201ENST00000623291 381 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC083865.1-201ENST00000636634 831 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AP003399.1-201ENST00000637534 361 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC068137.4-201ENST00000638485 296 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AC073429.2-201ENST00000569694 1444 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 AL731532.1-201ENST00000623972 4236 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.79□□□□□ -1.48
DKK3Q9UBP4 LINC01963-201ENST00000562038 3148 ntBASIC5.79□□□□□ -1.48
DKK3Q9UBP4 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AC008432.1-201ENST00000615912 1320 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 SNORA64.1-201ENST00000362600 132 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
DKK3Q9UBP4 RNU6-207P-201ENST00000384137 107 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 RNU6-1263P-201ENST00000384601 106 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 AL121977.1-201ENST00000401636 979 ntBASIC5.78□□□□□ -1.48
DKK3Q9UBP4 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms