Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VMP1Q96GC9 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC093311.1-201ENST00000506586 2021 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 AC079298.1-201ENST00000625026 1619 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 DDX6P1-205ENST00000441966 1436 ntBASIC5.29□□□□□ -1.56
VMP1Q96GC9 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VMP1Q96GC9 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.29□□□□□ -1.56
VMP1Q96GC9 ZNF652P1-201ENST00000442420 1309 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 SRRM1P3-201ENST00000426911 2678 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VMP1Q96GC9 AP001273.1-201ENST00000624493 3152 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 YES1P1-201ENST00000418510 1628 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 RNU4-39P-201ENST00000362455 127 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 RNA5SP131-201ENST00000365452 119 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 RNU4-31P-201ENST00000384211 141 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 RNU6-185P-201ENST00000384421 107 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 RNA5SP91-201ENST00000390902 119 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 AC013404.1-201ENST00000413068 249 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 RNGTTP1-201ENST00000420965 728 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 TNPO1P1-201ENST00000423641 1138 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 CHEK2P5-201ENST00000423877 246 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 OR10T1P-201ENST00000424327 947 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 AC009965.2-201ENST00000425328 970 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 MTND2P21-201ENST00000436242 1042 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 AP000281.1-201ENST00000444036 316 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 PPIAP20-201ENST00000449839 135 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 MTND3P4-201ENST00000453537 303 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 MRE11P1-201ENST00000464884 2127 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 RPL5P30-201ENST00000465511 891 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 HMGB3P14-201ENST00000494195 599 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 RN7SL101P-201ENST00000496350 279 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 IGKV2D-10-201ENST00000520194 281 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 AC027544.3-201ENST00000535082 757 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 AC110743.1-201ENST00000584870 478 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 FO393422.1-201ENST00000603908 708 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 AC010632.3-201ENST00000611377 369 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 AC008115.3-201ENST00000614874 549 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 AC037198.3-201ENST00000616754 526 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 CU639417.4-201ENST00000623928 207 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 FRG1EP-201ENST00000634469 770 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VMP1Q96GC9 THAP12P5-201ENST00000405864 2275 ntBASIC5.28□□□□□ -1.56
VMP1Q96GC9 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VMP1Q96GC9 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.28□□□□□ -1.56
VMP1Q96GC9 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
VMP1Q96GC9 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VMP1Q96GC9 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.27□□□□□ -1.57
VMP1Q96GC9 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VMP1Q96GC9 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 RNA5SP242-201ENST00000364171 118 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 RNU1-136P-201ENST00000384181 164 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 MIR143-201ENST00000385300 106 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 GAPDHP42-201ENST00000406848 981 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 RPS6P23-201ENST00000413224 722 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 AL596448.1-201ENST00000415024 392 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 AL645937.3-201ENST00000453647 936 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 AL136038.1-201ENST00000497246 351 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VMP1Q96GC9 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 AC074087.1-201ENST00000512059 724 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 AC114786.1-201ENST00000512892 1415 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 NRBF2P4-201ENST00000520874 850 ntBASIC5.27□□□□□ -1.57
VMP1Q96GC9 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.27□□□□□ -1.57
VMP1Q96GC9 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms