Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
COL4A4P53420 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A4P53420 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A4P53420 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.2□□□□□ -1.58
COL4A4P53420 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A4P53420 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A4P53420 AC108751.5-201ENST00000492880 1336 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC5.2□□□□□ -1.58
COL4A4P53420 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
COL4A4P53420 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.2□□□□□ -1.58
COL4A4P53420 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A4P53420 SNORA73.1-201ENST00000363107 205 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 RNA5SP509-201ENST00000364577 119 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 AL359837.1-201ENST00000381357 287 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5.2□□□□□ -1.58
COL4A4P53420 TBCAP2-201ENST00000416175 326 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.2□□□□□ -1.58
COL4A4P53420 AL645608.4-201ENST00000423619 154 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 FHP1-201ENST00000442741 703 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 AC044797.1-201ENST00000445744 679 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 BTF3P6-201ENST00000448054 499 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 RPL7AP52-201ENST00000458096 790 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 AC010326.1-201ENST00000462726 602 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 RPL5P12-201ENST00000477071 851 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC5.2□□□□□ -1.58
COL4A4P53420 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.2□□□□□ -1.58
COL4A4P53420 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5.2□□□□□ -1.58
COL4A4P53420 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.2□□□□□ -1.58
COL4A4P53420 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A4P53420 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC5.2□□□□□ -1.58
COL4A4P53420 AC024941.1-201ENST00000612250 334 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 AL589935.2-201ENST00000616471 1231 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
COL4A4P53420 AC007382.1-201ENST00000624376 2618 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A4P53420 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.2□□□□□ -1.58
COL4A4P53420 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A4P53420 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A4P53420 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC5.2□□□□□ -1.58
COL4A4P53420 AC093671.1-201ENST00000624981 2929 ntBASIC5.2□□□□□ -1.58
COL4A4P53420 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A4P53420 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A4P53420 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
COL4A4P53420 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.19□□□□□ -1.58
COL4A4P53420 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 ABCC13-202ENST00000463099 3842 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
COL4A4P53420 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
COL4A4P53420 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.19□□□□□ -1.58
COL4A4P53420 SNORA37-201ENST00000384504 129 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.19□□□□□ -1.58
COL4A4P53420 AC007738.1-201ENST00000413892 348 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 AL732292.1-201ENST00000426692 226 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 COX6CP13-201ENST00000428703 226 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 RPS3AP54-201ENST00000435535 734 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 SCAND3P1-201ENST00000439854 1060 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 RPL7AP10-201ENST00000481016 791 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 AL049874.2-201ENST00000492636 288 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 NIFKP7-201ENST00000503365 834 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 RNA5SP464-201ENST00000516251 108 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 MRPL49P2-201ENST00000521066 465 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC5.19□□□□□ -1.58
COL4A4P53420 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC5.19□□□□□ -1.58
COL4A4P53420 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC5.19□□□□□ -1.58
COL4A4P53420 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC5.19□□□□□ -1.58
COL4A4P53420 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.19□□□□□ -1.58
COL4A4P53420 AC114781.5-201ENST00000615297 108 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 AC015914.2-201ENST00000618167 288 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 AP000843.1-201ENST00000624880 701 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
COL4A4P53420 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
COL4A4P53420 AC009643.2-201ENST00000603543 1448 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 CR1-204ENST00000367052 7469 ntTSL 5 BASIC5.19□□□□□ -1.58
COL4A4P53420 CR1-205ENST00000367053 7469 ntTSL 5 BASIC5.19□□□□□ -1.58
COL4A4P53420 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.19□□□□□ -1.58
COL4A4P53420 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 AC011447.7-201ENST00000624228 1590 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.19□□□□□ -1.58
COL4A4P53420 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
COL4A4P53420 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A4P53420 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.19□□□□□ -1.58
COL4A4P53420 AP000756.2-201ENST00000624168 2567 ntBASIC5.19□□□□□ -1.58
COL4A4P53420 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.18□□□□□ -1.58
COL4A4P53420 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.18□□□□□ -1.58
COL4A4P53420 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A4P53420 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
COL4A4P53420 OR4K17-201ENST00000315543 1032 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms