Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 GAPDHP20-201ENST00000444107 1007 ntBASIC6.78□□□□□ -1.32
LIG3P49916 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC6.78□□□□□ -1.32
LIG3P49916 USP9YP29-201ENST00000445112 563 ntBASIC6.78□□□□□ -1.32
LIG3P49916 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC6.78□□□□□ -1.32
LIG3P49916 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC6.78□□□□□ -1.32
LIG3P49916 RPL9P33-201ENST00000484311 566 ntBASIC6.78□□□□□ -1.32
LIG3P49916 ACTG1P13-201ENST00000486987 1043 ntBASIC6.78□□□□□ -1.32
LIG3P49916 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC6.78□□□□□ -1.32
LIG3P49916 AC090071.1-201ENST00000507713 644 ntBASIC6.78□□□□□ -1.32
LIG3P49916 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC6.78□□□□□ -1.32
LIG3P49916 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.78□□□□□ -1.32
LIG3P49916 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIG3P49916 CA1-215ENST00000522389 551 ntTSL 3 BASIC6.78□□□□□ -1.32
LIG3P49916 AC007068.2-201ENST00000543168 395 ntBASIC6.78□□□□□ -1.32
LIG3P49916 AC008126.1-201ENST00000549019 480 ntBASIC6.78□□□□□ -1.32
LIG3P49916 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC6.78□□□□□ -1.32
LIG3P49916 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC6.78□□□□□ -1.32
LIG3P49916 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC6.78□□□□□ -1.32
LIG3P49916 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC6.78□□□□□ -1.32
LIG3P49916 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC6.78□□□□□ -1.32
LIG3P49916 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC6.78□□□□□ -1.32
LIG3P49916 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
LIG3P49916 AC005962.2-201ENST00000611427 652 ntBASIC6.78□□□□□ -1.32
LIG3P49916 Z99129.1-201ENST00000612510 255 ntBASIC6.78□□□□□ -1.32
LIG3P49916 MIR7844-201ENST00000616161 122 ntBASIC6.78□□□□□ -1.32
LIG3P49916 U1.34-201ENST00000618578 162 ntBASIC6.78□□□□□ -1.32
LIG3P49916 AC005514.1-201ENST00000623521 208 ntBASIC6.78□□□□□ -1.32
LIG3P49916 AC061999.1-201ENST00000624454 177 ntBASIC6.78□□□□□ -1.32
LIG3P49916 AL357562.1-201ENST00000624911 609 ntBASIC6.78□□□□□ -1.32
LIG3P49916 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC6.78□□□□□ -1.32
LIG3P49916 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.78□□□□□ -1.32
LIG3P49916 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
LIG3P49916 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC6.78□□□□□ -1.32
LIG3P49916 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIG3P49916 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.78□□□□□ -1.32
LIG3P49916 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC6.78□□□□□ -1.32
LIG3P49916 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.78□□□□□ -1.32
LIG3P49916 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
LIG3P49916 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIG3P49916 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIG3P49916 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.32
LIG3P49916 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC6.77□□□□□ -1.32
LIG3P49916 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.77□□□□□ -1.32
LIG3P49916 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.77□□□□□ -1.32
LIG3P49916 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC6.77□□□□□ -1.33
LIG3P49916 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
LIG3P49916 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.77□□□□□ -1.33
LIG3P49916 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.77□□□□□ -1.33
LIG3P49916 AC005725.1-201ENST00000577346 2607 ntBASIC6.77□□□□□ -1.33
LIG3P49916 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.77□□□□□ -1.33
LIG3P49916 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
LIG3P49916 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
LIG3P49916 AL121657.1-201ENST00000327215 531 ntBASIC6.77□□□□□ -1.33
LIG3P49916 RN7SKP184-201ENST00000362348 333 ntBASIC6.77□□□□□ -1.33
LIG3P49916 RNU6-1263P-201ENST00000384601 106 ntBASIC6.77□□□□□ -1.33
LIG3P49916 SNORA7A-201ENST00000384765 139 ntBASIC6.77□□□□□ -1.33
LIG3P49916 AL034417.1-201ENST00000399343 800 ntBASIC6.77□□□□□ -1.33
LIG3P49916 FDPSP5-201ENST00000399474 1057 ntBASIC6.77□□□□□ -1.33
LIG3P49916 AL034374.1-201ENST00000406329 351 ntBASIC6.77□□□□□ -1.33
LIG3P49916 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC6.77□□□□□ -1.33
LIG3P49916 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC6.77□□□□□ -1.33
LIG3P49916 RPS17P17-201ENST00000419392 409 ntBASIC6.77□□□□□ -1.33
LIG3P49916 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC6.77□□□□□ -1.33
LIG3P49916 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.77□□□□□ -1.33
LIG3P49916 AL050321.1-201ENST00000432363 400 ntBASIC6.77□□□□□ -1.33
LIG3P49916 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC6.77□□□□□ -1.33
LIG3P49916 RPEP4-201ENST00000437636 602 ntBASIC6.77□□□□□ -1.33
LIG3P49916 AC093155.1-201ENST00000440164 826 ntBASIC6.77□□□□□ -1.33
LIG3P49916 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC6.77□□□□□ -1.33
LIG3P49916 SNRPBP1-201ENST00000443634 282 ntBASIC6.77□□□□□ -1.33
LIG3P49916 PFN1P11-201ENST00000445829 389 ntBASIC6.77□□□□□ -1.33
LIG3P49916 ST13P20-201ENST00000447996 1065 ntBASIC6.77□□□□□ -1.33
LIG3P49916 ZNF114P1-201ENST00000453500 292 ntBASIC6.77□□□□□ -1.33
LIG3P49916 AL034369.1-201ENST00000453808 477 ntBASIC6.77□□□□□ -1.33
LIG3P49916 SLC25A51P1-201ENST00000468432 871 ntBASIC6.77□□□□□ -1.33
LIG3P49916 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC6.77□□□□□ -1.33
LIG3P49916 AP003385.3-201ENST00000472498 287 ntBASIC6.77□□□□□ -1.33
LIG3P49916 RN7SL382P-201ENST00000482631 282 ntBASIC6.77□□□□□ -1.33
LIG3P49916 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
LIG3P49916 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC6.77□□□□□ -1.33
LIG3P49916 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC6.77□□□□□ -1.33
LIG3P49916 RN7SKP196-201ENST00000516267 345 ntBASIC6.77□□□□□ -1.33
LIG3P49916 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC6.77□□□□□ -1.33
LIG3P49916 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC6.77□□□□□ -1.33
LIG3P49916 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
LIG3P49916 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC6.77□□□□□ -1.33
LIG3P49916 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC6.77□□□□□ -1.33
LIG3P49916 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.77□□□□□ -1.33
LIG3P49916 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC6.77□□□□□ -1.33
LIG3P49916 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC6.77□□□□□ -1.33
LIG3P49916 MTCYBP22-201ENST00000603788 447 ntBASIC6.77□□□□□ -1.33
LIG3P49916 AC097467.4-201ENST00000605504 141 ntBASIC6.77□□□□□ -1.33
LIG3P49916 AC244100.4-201ENST00000617747 388 ntBASIC6.77□□□□□ -1.33
LIG3P49916 AC211486.4-201ENST00000621495 113 ntBASIC6.77□□□□□ -1.33
LIG3P49916 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC6.77□□□□□ -1.33
LIG3P49916 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.77□□□□□ -1.33
LIG3P49916 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.77□□□□□ -1.33
LIG3P49916 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC6.77□□□□□ -1.33
LIG3P49916 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
LIG3P49916 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.77□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms