Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
CUX1P39880 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC8□□□□□ -1.13
CUX1P39880 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC8□□□□□ -1.13
CUX1P39880 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC8□□□□□ -1.13
CUX1P39880 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC8□□□□□ -1.13
CUX1P39880 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC8□□□□□ -1.13
CUX1P39880 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC8□□□□□ -1.13
CUX1P39880 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC8□□□□□ -1.13
CUX1P39880 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CUX1P39880 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC7.99□□□□□ -1.13
CUX1P39880 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CUX1P39880 AC100871.1-201ENST00000507871 1456 ntBASIC7.99□□□□□ -1.13
CUX1P39880 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CUX1P39880 RN7SKP267-201ENST00000410381 285 ntBASIC7.99□□□□□ -1.13
CUX1P39880 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CUX1P39880 QRSL1P2-201ENST00000418582 964 ntBASIC7.99□□□□□ -1.13
CUX1P39880 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC7.99□□□□□ -1.13
CUX1P39880 PYM1-205ENST00000547925 499 ntTSL 3 BASIC7.99□□□□□ -1.13
CUX1P39880 AC069061.3-201ENST00000582254 823 ntBASIC7.99□□□□□ -1.13
CUX1P39880 AC090948.1-201ENST00000607464 549 ntBASIC7.99□□□□□ -1.13
CUX1P39880 U3.53-201ENST00000628922 216 ntBASIC7.99□□□□□ -1.13
CUX1P39880 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC7.99□□□□□ -1.13
CUX1P39880 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
CUX1P39880 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CUX1P39880 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
CUX1P39880 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC7.99□□□□□ -1.13
CUX1P39880 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC7.99□□□□□ -1.13
CUX1P39880 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
CUX1P39880 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC7.99□□□□□ -1.13
CUX1P39880 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC7.98□□□□□ -1.13
CUX1P39880 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC7.98□□□□□ -1.13
CUX1P39880 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC7.98□□□□□ -1.13
CUX1P39880 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC7.98□□□□□ -1.13
CUX1P39880 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC7.98□□□□□ -1.13
CUX1P39880 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC7.98□□□□□ -1.13
CUX1P39880 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC7.98□□□□□ -1.13
CUX1P39880 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC7.98□□□□□ -1.13
CUX1P39880 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC7.98□□□□□ -1.13
CUX1P39880 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC7.98□□□□□ -1.13
CUX1P39880 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC7.98□□□□□ -1.13
CUX1P39880 AP000843.1-201ENST00000624880 701 ntBASIC7.98□□□□□ -1.13
CUX1P39880 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC7.98□□□□□ -1.13
CUX1P39880 NRK-204ENST00000540278 1687 ntTSL 2 BASIC7.98□□□□□ -1.13
CUX1P39880 ASNSP1-204ENST00000641977 1664 ntBASIC7.98□□□□□ -1.13
CUX1P39880 AC021146.4-201ENST00000309229 279 ntBASIC7.98□□□□□ -1.13
CUX1P39880 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
CUX1P39880 GPS2P1-201ENST00000411761 986 ntBASIC7.98□□□□□ -1.13
CUX1P39880 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC7.98□□□□□ -1.13
CUX1P39880 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC7.98□□□□□ -1.13
CUX1P39880 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
CUX1P39880 CYCSP34-201ENST00000458172 304 ntBASIC7.98□□□□□ -1.13
CUX1P39880 AC016559.2-201ENST00000510759 359 ntBASIC7.98□□□□□ -1.13
CUX1P39880 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC7.98□□□□□ -1.13
CUX1P39880 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC7.98□□□□□ -1.13
CUX1P39880 AC021422.1-201ENST00000621212 473 ntBASIC7.98□□□□□ -1.13
CUX1P39880 AC243960.7-201ENST00000623532 707 ntBASIC7.98□□□□□ -1.13
CUX1P39880 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.13
CUX1P39880 MFSD8-220ENST00000641243 1422 ntBASIC7.97□□□□□ -1.13
CUX1P39880 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
CUX1P39880 AC104118.1-201ENST00000607625 1589 ntBASIC7.97□□□□□ -1.13
CUX1P39880 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC7.97□□□□□ -1.13
CUX1P39880 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC7.97□□□□□ -1.13
CUX1P39880 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
CUX1P39880 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
CUX1P39880 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC7.97□□□□□ -1.13
CUX1P39880 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC7.97□□□□□ -1.13
CUX1P39880 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
CUX1P39880 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
CUX1P39880 VN1R37P-201ENST00000419096 748 ntBASIC7.97□□□□□ -1.13
CUX1P39880 RPL7P57-201ENST00000423238 740 ntBASIC7.97□□□□□ -1.13
CUX1P39880 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC7.97□□□□□ -1.13
CUX1P39880 AC015795.1-201ENST00000513669 327 ntBASIC7.97□□□□□ -1.13
CUX1P39880 RNU4ATAC18P-201ENST00000516179 126 ntBASIC7.97□□□□□ -1.13
CUX1P39880 SUMO2P19-201ENST00000518920 295 ntBASIC7.97□□□□□ -1.13
CUX1P39880 MRPL49P2-201ENST00000521066 465 ntBASIC7.97□□□□□ -1.13
CUX1P39880 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC7.97□□□□□ -1.13
CUX1P39880 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC7.97□□□□□ -1.13
CUX1P39880 RN7SL652P-201ENST00000577769 300 ntBASIC7.97□□□□□ -1.13
CUX1P39880 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC7.97□□□□□ -1.13
CUX1P39880 AL445567.2-201ENST00000618935 498 ntBASIC7.97□□□□□ -1.13
CUX1P39880 AL035461.2-201ENST00000619201 524 ntBASIC7.97□□□□□ -1.13
CUX1P39880 AL161637.1-201ENST00000622380 412 ntBASIC7.97□□□□□ -1.13
CUX1P39880 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
CUX1P39880 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC7.97□□□□□ -1.13
CUX1P39880 AC097478.1-206ENST00000513572 2010 ntTSL 3 BASIC7.96□□□□□ -1.13
CUX1P39880 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
CUX1P39880 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC7.96□□□□□ -1.13
CUX1P39880 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
CUX1P39880 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
CUX1P39880 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
CUX1P39880 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC7.96□□□□□ -1.14
CUX1P39880 OR4C10P-201ENST00000434991 931 ntBASIC7.96□□□□□ -1.14
CUX1P39880 EEF1A1P1-201ENST00000447052 739 ntBASIC7.96□□□□□ -1.14
CUX1P39880 RPL7P19-201ENST00000469948 618 ntBASIC7.96□□□□□ -1.14
CUX1P39880 CARD16-203ENST00000525374 503 ntTSL 3 BASIC7.96□□□□□ -1.14
CUX1P39880 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC7.96□□□□□ -1.14
CUX1P39880 AC007224.1-201ENST00000564410 144 ntBASIC7.96□□□□□ -1.14
CUX1P39880 AC106785.1-201ENST00000565935 262 ntBASIC7.96□□□□□ -1.14
CUX1P39880 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
CUX1P39880 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms