Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.82□□□□□ -1.48
BDNFP23560 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.82□□□□□ -1.48
BDNFP23560 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.82□□□□□ -1.48
BDNFP23560 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.82□□□□□ -1.48
BDNFP23560 MIR1269B-201ENST00000580405 75 ntBASIC5.82□□□□□ -1.48
BDNFP23560 IMMP1LP3-201ENST00000604197 224 ntBASIC5.82□□□□□ -1.48
BDNFP23560 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
BDNFP23560 AC025016.1-201ENST00000616746 682 ntBASIC5.82□□□□□ -1.48
BDNFP23560 AC009704.2-201ENST00000618739 483 ntBASIC5.82□□□□□ -1.48
BDNFP23560 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC5.82□□□□□ -1.48
BDNFP23560 AC010435.1-201ENST00000623353 1177 ntBASIC5.82□□□□□ -1.48
BDNFP23560 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
BDNFP23560 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
BDNFP23560 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
BDNFP23560 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.82□□□□□ -1.48
BDNFP23560 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
BDNFP23560 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
BDNFP23560 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
BDNFP23560 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.81□□□□□ -1.48
BDNFP23560 CR788268.1-201ENST00000603931 1809 ntBASIC5.81□□□□□ -1.48
BDNFP23560 AC022893.2-201ENST00000564832 3296 ntBASIC5.81□□□□□ -1.48
BDNFP23560 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.81□□□□□ -1.48
BDNFP23560 AL360270.2-201ENST00000562952 5985 ntBASIC5.81□□□□□ -1.48
BDNFP23560 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
BDNFP23560 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
BDNFP23560 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
BDNFP23560 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.81□□□□□ -1.48
BDNFP23560 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
BDNFP23560 RPL31P52-201ENST00000407532 367 ntBASIC5.81□□□□□ -1.48
BDNFP23560 AP000357.1-201ENST00000409926 1165 ntBASIC5.81□□□□□ -1.48
BDNFP23560 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.81□□□□□ -1.48
BDNFP23560 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
BDNFP23560 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.81□□□□□ -1.48
BDNFP23560 RPL7L1P9-201ENST00000431298 745 ntBASIC5.81□□□□□ -1.48
BDNFP23560 MTND4LP7-201ENST00000431728 294 ntBASIC5.81□□□□□ -1.48
BDNFP23560 AL035458.1-201ENST00000433096 585 ntBASIC5.81□□□□□ -1.48
BDNFP23560 AC105399.1-202ENST00000447303 205 ntBASIC5.81□□□□□ -1.48
BDNFP23560 RPL31P44-201ENST00000447680 377 ntBASIC5.81□□□□□ -1.48
BDNFP23560 AL606490.1-201ENST00000452266 765 ntBASIC5.81□□□□□ -1.48
BDNFP23560 OR52A4P-202ENST00000481634 799 ntBASIC5.81□□□□□ -1.48
BDNFP23560 RPS4XP1-201ENST00000482189 787 ntBASIC5.81□□□□□ -1.48
BDNFP23560 RPS17P5-201ENST00000498293 408 ntBASIC5.81□□□□□ -1.48
BDNFP23560 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.81□□□□□ -1.48
BDNFP23560 AP002812.4-201ENST00000532139 286 ntBASIC5.81□□□□□ -1.48
BDNFP23560 AC122688.1-201ENST00000541494 223 ntBASIC5.81□□□□□ -1.48
BDNFP23560 BLZF2P-201ENST00000553776 1130 ntBASIC5.81□□□□□ -1.48
BDNFP23560 AP001357.1-201ENST00000586304 1053 ntBASIC5.81□□□□□ -1.48
BDNFP23560 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC5.81□□□□□ -1.48
BDNFP23560 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.81□□□□□ -1.48
BDNFP23560 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.81□□□□□ -1.48
BDNFP23560 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.81□□□□□ -1.48
BDNFP23560 AL356490.1-201ENST00000623079 479 ntBASIC5.81□□□□□ -1.48
BDNFP23560 AC021766.1-201ENST00000624404 741 ntBASIC5.81□□□□□ -1.48
BDNFP23560 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.81□□□□□ -1.48
BDNFP23560 AC000095.2-202ENST00000637415 154 ntBASIC5.81□□□□□ -1.48
BDNFP23560 CASC19-264ENST00000641912 1184 ntBASIC5.81□□□□□ -1.48
BDNFP23560 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.81□□□□□ -1.48
BDNFP23560 LINC01109-201ENST00000603837 3081 ntBASIC5.81□□□□□ -1.48
BDNFP23560 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
BDNFP23560 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
BDNFP23560 Z95327.2-201ENST00000414579 1873 ntBASIC5.81□□□□□ -1.48
BDNFP23560 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
BDNFP23560 GTF2H2B-203ENST00000508065 1432 ntBASIC5.81□□□□□ -1.48
BDNFP23560 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
BDNFP23560 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.81□□□□□ -1.48
BDNFP23560 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
BDNFP23560 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
BDNFP23560 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.8□□□□□ -1.48
BDNFP23560 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
BDNFP23560 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.8□□□□□ -1.48
BDNFP23560 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
BDNFP23560 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
BDNFP23560 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
BDNFP23560 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
BDNFP23560 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.8□□□□□ -1.48
BDNFP23560 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
BDNFP23560 MIR133A2-201ENST00000347538 102 ntBASIC5.8□□□□□ -1.48
BDNFP23560 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
BDNFP23560 RNA5SP335-201ENST00000363817 110 ntBASIC5.8□□□□□ -1.48
BDNFP23560 U3.10-201ENST00000364459 214 ntBASIC5.8□□□□□ -1.48
BDNFP23560 RNU6-171P-201ENST00000384354 107 ntBASIC5.8□□□□□ -1.48
BDNFP23560 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
BDNFP23560 AL390774.1-201ENST00000411924 246 ntBASIC5.8□□□□□ -1.48
BDNFP23560 AL133482.1-201ENST00000415988 498 ntBASIC5.8□□□□□ -1.48
BDNFP23560 AL121878.1-201ENST00000418638 859 ntBASIC5.8□□□□□ -1.48
BDNFP23560 FO393419.3-201ENST00000428741 282 ntBASIC5.8□□□□□ -1.48
BDNFP23560 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.8□□□□□ -1.48
BDNFP23560 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.8□□□□□ -1.48
BDNFP23560 RPS15AP29-201ENST00000445539 400 ntBASIC5.8□□□□□ -1.48
BDNFP23560 RPS26P41-201ENST00000450370 284 ntBASIC5.8□□□□□ -1.48
BDNFP23560 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
BDNFP23560 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC5.8□□□□□ -1.48
BDNFP23560 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC5.8□□□□□ -1.48
BDNFP23560 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.8□□□□□ -1.48
BDNFP23560 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.8□□□□□ -1.48
BDNFP23560 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
BDNFP23560 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC5.8□□□□□ -1.48
BDNFP23560 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.8□□□□□ -1.48
BDNFP23560 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC5.8□□□□□ -1.48
BDNFP23560 HNRNPCP4-201ENST00000571636 900 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms