Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SIX2Q9NPC8 AC008758.3-201ENST00000507003 1829 ntBASIC5.3□□□□□ -1.56
SIX2Q9NPC8 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 MTCO1P11-201ENST00000429111 1528 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 MT-RNR1-201ENST00000389680 954 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 GJA6P-201ENST00000415117 1042 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AL355433.1-201ENST00000422804 300 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 EIF4HP2-201ENST00000424380 563 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 Z85994.2-201ENST00000434327 452 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 EEF1B2P5-201ENST00000444820 548 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AC004980.4-201ENST00000513375 203 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AC092490.3-201ENST00000545370 572 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AC011270.1-201ENST00000558606 583 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AC009268.1-201ENST00000561352 1203 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 SUMO2P15-201ENST00000604285 278 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AL713998.2-201ENST00000604538 1198 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AL139407.1-201ENST00000613826 1175 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AL356752.1-201ENST00000615844 593 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AC104307.1-201ENST00000616142 196 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 AC005899.7-201ENST00000618199 588 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SIX2Q9NPC8 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.29□□□□□ -1.56
SIX2Q9NPC8 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 DHX9P1-201ENST00000436565 3076 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 SNORA51.1-201ENST00000363243 140 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 EIF2S2P3-201ENST00000428356 999 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 RPS26P4-201ENST00000431743 355 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 RPL7P11-201ENST00000437586 658 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 RPL23AP56-201ENST00000460778 453 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 RN7SL244P-201ENST00000493405 297 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 RPL37AP8-201ENST00000494116 276 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 AC022832.1-201ENST00000530718 645 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 BNIP3P1-201ENST00000547295 580 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 AC020915.5-201ENST00000596836 964 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 AC087783.2-201ENST00000605070 562 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 AC078880.4-201ENST00000617627 1749 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 AL022311.1-201ENST00000623726 19416 ntBASIC5.28□□□□□ -1.56
SIX2Q9NPC8 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.28□□□□□ -1.56
SIX2Q9NPC8 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.27□□□□□ -1.57
SIX2Q9NPC8 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SIX2Q9NPC8 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.27□□□□□ -1.57
SIX2Q9NPC8 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.27□□□□□ -1.57
SIX2Q9NPC8 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.27□□□□□ -1.57
SIX2Q9NPC8 AC112198.2-201ENST00000426589 6996 ntBASIC5.27□□□□□ -1.57
SIX2Q9NPC8 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SIX2Q9NPC8 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
SIX2Q9NPC8 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SIX2Q9NPC8 RNU6-819P-201ENST00000364116 107 ntBASIC5.27□□□□□ -1.57
SIX2Q9NPC8 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
SIX2Q9NPC8 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms