Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 PANDAR-201ENST00000629595 1506 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AL355834.1-201ENST00000556602 3965 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 AC245100.2-201ENST00000454544 1679 ntBASIC5.12□□□□□ -1.59
CCDC3Q9BQI4 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC092747.4-201ENST00000620519 1861 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 CDC27P2-201ENST00000425026 1922 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AP000542.2-201ENST00000623199 6179 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 SNURFL-201ENST00000309296 343 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 RNA5SP123-201ENST00000363244 119 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AL035419.1-201ENST00000397037 564 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 OR1F12-201ENST00000402365 945 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AL445213.1-201ENST00000412589 747 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 RPA2P2-201ENST00000419698 796 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC090018.1-201ENST00000434369 367 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 NDUFB4P8-201ENST00000435351 367 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 H2AFZP6-201ENST00000444403 394 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC022133.1-201ENST00000490961 571 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AK4P6-201ENST00000505168 528 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC108157.1-201ENST00000510511 539 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 OR5AZ1P-201ENST00000527448 943 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC079064.1-201ENST00000528365 362 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 BRD9P1-201ENST00000529855 560 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 OR51C1P-201ENST00000608504 942 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AL592494.3-201ENST00000609485 464 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC093799.2-201ENST00000610062 578 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC020923.1-201ENST00000624021 917 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 SAMM50P1-201ENST00000455403 1399 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC093671.1-201ENST00000624981 2929 ntBASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
CCDC3Q9BQI4 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 RN7SKP104-201ENST00000362605 328 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 SNORA51.8-201ENST00000384234 132 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC104837.2-201ENST00000427236 424 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 BX276092.6-201ENST00000430476 250 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 MTCO3P43-201ENST00000440974 771 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AC073648.4-201ENST00000442655 781 ntBASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.1□□□□□ -1.59
CCDC3Q9BQI4 BX276092.8-201ENST00000455722 250 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms