Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.01□□□□□ -1.45
COL5A3P25940 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC6.01□□□□□ -1.45
COL5A3P25940 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC6.01□□□□□ -1.45
COL5A3P25940 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A3P25940 AC011447.7-201ENST00000624228 1590 ntBASIC6.01□□□□□ -1.45
COL5A3P25940 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC6.01□□□□□ -1.45
COL5A3P25940 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A3P25940 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A3P25940 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL5A3P25940 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL5A3P25940 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL5A3P25940 ZNF137P-201ENST00000456718 1920 ntBASIC6□□□□□ -1.45
COL5A3P25940 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC6□□□□□ -1.45
COL5A3P25940 AC017079.1-201ENST00000333650 415 ntBASIC6□□□□□ -1.45
COL5A3P25940 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL5A3P25940 RN7SKP227-201ENST00000364445 330 ntBASIC6□□□□□ -1.45
COL5A3P25940 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC6□□□□□ -1.45
COL5A3P25940 ACTR3P2-201ENST00000439585 1257 ntBASIC6□□□□□ -1.45
COL5A3P25940 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC6□□□□□ -1.45
COL5A3P25940 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC6□□□□□ -1.45
COL5A3P25940 AC016559.2-201ENST00000510759 359 ntBASIC6□□□□□ -1.45
COL5A3P25940 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC6□□□□□ -1.45
COL5A3P25940 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL5A3P25940 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC6□□□□□ -1.45
COL5A3P25940 AL121932.1-201ENST00000605542 214 ntBASIC6□□□□□ -1.45
COL5A3P25940 AC090948.1-201ENST00000607464 549 ntBASIC6□□□□□ -1.45
COL5A3P25940 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL5A3P25940 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
COL5A3P25940 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
COL5A3P25940 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC6□□□□□ -1.45
COL5A3P25940 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
COL5A3P25940 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6□□□□□ -1.45
COL5A3P25940 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6□□□□□ -1.45
COL5A3P25940 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL5A3P25940 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC6□□□□□ -1.45
COL5A3P25940 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
COL5A3P25940 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC6□□□□□ -1.45
COL5A3P25940 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL5A3P25940 OR1F12-201ENST00000402365 945 ntBASIC5.99□□□□□ -1.45
COL5A3P25940 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL5A3P25940 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.99□□□□□ -1.45
COL5A3P25940 AL359073.1-201ENST00000448036 403 ntBASIC5.99□□□□□ -1.45
COL5A3P25940 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.99□□□□□ -1.45
COL5A3P25940 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC5.99□□□□□ -1.45
COL5A3P25940 AL020997.2-201ENST00000602607 184 ntBASIC5.99□□□□□ -1.45
COL5A3P25940 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC5.99□□□□□ -1.45
COL5A3P25940 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.99□□□□□ -1.45
COL5A3P25940 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL5A3P25940 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL5A3P25940 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL5A3P25940 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL5A3P25940 AL356387.2-201ENST00000422272 243 ntBASIC5.99□□□□□ -1.45
COL5A3P25940 RPL7AP25-201ENST00000423357 805 ntBASIC5.99□□□□□ -1.45
COL5A3P25940 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
COL5A3P25940 CYCSP34-201ENST00000458172 304 ntBASIC5.99□□□□□ -1.45
COL5A3P25940 RPL7P19-201ENST00000469948 618 ntBASIC5.99□□□□□ -1.45
COL5A3P25940 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL5A3P25940 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC5.99□□□□□ -1.45
COL5A3P25940 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL5A3P25940 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.99□□□□□ -1.45
COL5A3P25940 AGGF1P9-201ENST00000561884 913 ntBASIC5.99□□□□□ -1.45
COL5A3P25940 BNIP3P5-201ENST00000562290 498 ntBASIC5.99□□□□□ -1.45
COL5A3P25940 RN7SL652P-201ENST00000577769 300 ntBASIC5.99□□□□□ -1.45
COL5A3P25940 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC5.99□□□□□ -1.45
COL5A3P25940 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL5A3P25940 AC005831.1-201ENST00000624384 1697 ntBASIC5.99□□□□□ -1.45
COL5A3P25940 ASNSP1-204ENST00000641977 1664 ntBASIC5.99□□□□□ -1.45
COL5A3P25940 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL5A3P25940 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL5A3P25940 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
COL5A3P25940 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL5A3P25940 AL592182.3-201ENST00000642132 3304 ntBASIC5.98□□□□□ -1.45
COL5A3P25940 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.98□□□□□ -1.45
COL5A3P25940 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
COL5A3P25940 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC5.98□□□□□ -1.45
COL5A3P25940 AC004817.4-201ENST00000602396 3625 ntBASIC5.98□□□□□ -1.45
COL5A3P25940 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.98□□□□□ -1.45
COL5A3P25940 AL121950.1-201ENST00000624993 2077 ntBASIC5.98□□□□□ -1.45
COL5A3P25940 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL5A3P25940 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
COL5A3P25940 SNX10-203ENST00000409367 746 ntTSL 5 BASIC5.98□□□□□ -1.45
COL5A3P25940 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.98□□□□□ -1.45
COL5A3P25940 NPM1P18-201ENST00000434232 732 ntBASIC5.98□□□□□ -1.45
COL5A3P25940 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.98□□□□□ -1.45
COL5A3P25940 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.98□□□□□ -1.45
COL5A3P25940 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.98□□□□□ -1.45
COL5A3P25940 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.98□□□□□ -1.45
COL5A3P25940 RN7SL558P-201ENST00000497468 299 ntBASIC5.98□□□□□ -1.45
COL5A3P25940 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.98□□□□□ -1.45
COL5A3P25940 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.98□□□□□ -1.45
COL5A3P25940 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL5A3P25940 AC097063.1-201ENST00000426714 1797 ntBASIC5.98□□□□□ -1.45
COL5A3P25940 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
COL5A3P25940 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL5A3P25940 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC5.98□□□□□ -1.45
COL5A3P25940 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL5A3P25940 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
COL5A3P25940 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.98□□□□□ -1.45
COL5A3P25940 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL5A3P25940 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms