Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC092376.2-201ENST00000622621 4116 ntBASIC4.42□□□□□ -1.7
USF1P22415 MTCO1P15-201ENST00000529569 1526 ntBASIC4.42□□□□□ -1.7
USF1P22415 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 THAP12P8-201ENST00000447914 2115 ntBASIC4.42□□□□□ -1.7
USF1P22415 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.42□□□□□ -1.7
USF1P22415 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.42□□□□□ -1.7
USF1P22415 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 RNU6-1331P-201ENST00000363658 106 ntBASIC4.42□□□□□ -1.7
USF1P22415 SNORA48.4-201ENST00000391089 134 ntBASIC4.42□□□□□ -1.7
USF1P22415 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 AC136624.1-201ENST00000400791 413 ntBASIC4.42□□□□□ -1.7
USF1P22415 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 PPIAP9-201ENST00000403866 498 ntBASIC4.42□□□□□ -1.7
USF1P22415 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.42□□□□□ -1.7
USF1P22415 AL591623.2-201ENST00000449978 222 ntBASIC4.42□□□□□ -1.7
USF1P22415 TAAR4P-201ENST00000454843 1039 ntBASIC4.42□□□□□ -1.7
USF1P22415 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.42□□□□□ -1.7
USF1P22415 snoU13.20-201ENST00000459180 104 ntBASIC4.42□□□□□ -1.7
USF1P22415 AC069304.1-201ENST00000491593 704 ntBASIC4.42□□□□□ -1.7
USF1P22415 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC4.42□□□□□ -1.7
USF1P22415 AC021193.1-201ENST00000511607 420 ntBASIC4.42□□□□□ -1.7
USF1P22415 AC108043.1-201ENST00000512696 574 ntBASIC4.42□□□□□ -1.7
USF1P22415 AC110775.1-201ENST00000513721 462 ntBASIC4.42□□□□□ -1.7
USF1P22415 RNA5SP373-201ENST00000517271 95 ntBASIC4.42□□□□□ -1.7
USF1P22415 AC012400.1-201ENST00000518452 381 ntBASIC4.42□□□□□ -1.7
USF1P22415 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.42□□□□□ -1.7
USF1P22415 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 AC005000.1-201ENST00000536192 288 ntBASIC4.42□□□□□ -1.7
USF1P22415 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.42□□□□□ -1.7
USF1P22415 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.42□□□□□ -1.7
USF1P22415 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.42□□□□□ -1.7
USF1P22415 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC4.42□□□□□ -1.7
USF1P22415 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.42□□□□□ -1.7
USF1P22415 RN7SL356P-201ENST00000582228 248 ntBASIC4.42□□□□□ -1.7
USF1P22415 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.42□□□□□ -1.7
USF1P22415 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC4.42□□□□□ -1.7
USF1P22415 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.42□□□□□ -1.7
USF1P22415 FAM25E-202ENST00000608562 189 ntBASIC4.42□□□□□ -1.7
USF1P22415 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC4.42□□□□□ -1.7
USF1P22415 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.42□□□□□ -1.7
USF1P22415 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC4.42□□□□□ -1.7
USF1P22415 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC4.42□□□□□ -1.7
USF1P22415 AC091905.4-201ENST00000623432 202 ntBASIC4.42□□□□□ -1.7
USF1P22415 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.42□□□□□ -1.7
USF1P22415 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.42□□□□□ -1.7
USF1P22415 AC073869.8-201ENST00000641806 335 ntBASIC4.42□□□□□ -1.7
USF1P22415 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
USF1P22415 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 AC104260.2-201ENST00000623551 3497 ntBASIC4.42□□□□□ -1.7
USF1P22415 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.42□□□□□ -1.7
USF1P22415 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USF1P22415 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.42□□□□□ -1.7
USF1P22415 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
USF1P22415 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.41□□□□□ -1.7
USF1P22415 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC4.41□□□□□ -1.7
USF1P22415 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USF1P22415 BTBD10P1-201ENST00000549824 1352 ntBASIC4.41□□□□□ -1.7
USF1P22415 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USF1P22415 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
USF1P22415 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
USF1P22415 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
USF1P22415 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
USF1P22415 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
USF1P22415 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USF1P22415 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
USF1P22415 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC4.41□□□□□ -1.7
USF1P22415 SNURFL-201ENST00000309296 343 ntBASIC4.41□□□□□ -1.7
USF1P22415 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.41□□□□□ -1.7
USF1P22415 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USF1P22415 RNA5SP123-201ENST00000363244 119 ntBASIC4.41□□□□□ -1.7
USF1P22415 GAPDHP15-201ENST00000398586 975 ntBASIC4.41□□□□□ -1.7
USF1P22415 HYALP1-201ENST00000417674 1279 ntBASIC4.41□□□□□ -1.7
USF1P22415 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.41□□□□□ -1.7
USF1P22415 AC104837.2-201ENST00000427236 424 ntBASIC4.41□□□□□ -1.7
USF1P22415 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC4.41□□□□□ -1.7
USF1P22415 AL049745.1-201ENST00000433953 286 ntBASIC4.41□□□□□ -1.7
USF1P22415 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.41□□□□□ -1.7
USF1P22415 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC4.41□□□□□ -1.7
USF1P22415 AC016772.1-201ENST00000444170 1261 ntBASIC4.41□□□□□ -1.7
USF1P22415 AC104634.1-201ENST00000452720 462 ntBASIC4.41□□□□□ -1.7
USF1P22415 RPS3AP41-201ENST00000462701 778 ntBASIC4.41□□□□□ -1.7
USF1P22415 RPS29P22-201ENST00000472363 168 ntBASIC4.41□□□□□ -1.7
USF1P22415 AC007686.1-201ENST00000488511 463 ntBASIC4.41□□□□□ -1.7
USF1P22415 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.41□□□□□ -1.7
USF1P22415 USP9YP2-201ENST00000504503 1000 ntBASIC4.41□□□□□ -1.7
USF1P22415 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.41□□□□□ -1.7
USF1P22415 AP001960.1-201ENST00000506494 658 ntBASIC4.41□□□□□ -1.7
USF1P22415 USP9YP1-201ENST00000513521 1002 ntBASIC4.41□□□□□ -1.7
USF1P22415 RN7SKP34-201ENST00000516142 244 ntBASIC4.41□□□□□ -1.7
USF1P22415 RN7SKP260-201ENST00000516907 149 ntBASIC4.41□□□□□ -1.7
USF1P22415 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.41□□□□□ -1.7
USF1P22415 AC022616.2-201ENST00000523185 300 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms