Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 AC093671.1-201ENST00000624981 2929 ntBASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 DNM1P47-203ENST00000571780 12667 ntBASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
SHROOM4Q9ULL8 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 AC133552.1-201ENST00000569988 4007 ntBASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 OR4K15-201ENST00000305051 1216 ntBASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 RNA5SP191-201ENST00000362585 102 ntBASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 Y_RNA.62-201ENST00000362840 99 ntBASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 SNORA66-201ENST00000384792 133 ntBASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 MED28P3-201ENST00000444288 531 ntBASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 IGHV5-78-201ENST00000450948 295 ntBASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 AC083829.1-201ENST00000503756 657 ntBASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 RNU6-551P-201ENST00000516661 103 ntBASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 AC005962.2-201ENST00000611427 652 ntBASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 AC125257.1-201ENST00000560400 2930 ntBASIC9.62□□□□□ -0.87
SHROOM4Q9ULL8 AL592148.3-201ENST00000608771 2646 ntBASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 AC023141.6-201ENST00000429418 337 ntBASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 RN7SL189P-201ENST00000468631 289 ntBASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
SHROOM4Q9ULL8 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 MAX-203ENST00000341653 330 ntTSL 2 BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 RPL12P43-201ENST00000420608 499 ntBASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 RPL12P34-201ENST00000424532 479 ntBASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 TCEA1P1-201ENST00000449716 880 ntBASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 OR6C72P-201ENST00000451403 892 ntBASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 AC093720.1-201ENST00000505681 714 ntBASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 AC025674.1-201ENST00000507074 324 ntBASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 NPM1P21-201ENST00000513394 762 ntBASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 IGHVIII-2-1-201ENST00000518843 291 ntBASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 OR8Q1P-201ENST00000526467 655 ntBASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 uc_338.7-201ENST00000621834 124 ntBASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
SHROOM4Q9ULL8 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 RNU1-74P-201ENST00000384108 171 ntBASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 OR8V1P-201ENST00000395193 873 ntBASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 MORF4L1P3-201ENST00000525966 950 ntBASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 NMNAT1P1-201ENST00000554095 876 ntBASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 AP005119.2-201ENST00000579735 1105 ntBASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 AC009303.3-201ENST00000591103 736 ntBASIC9.59□□□□□ -0.87
SHROOM4Q9ULL8 AC005618.4-201ENST00000625053 554 ntBASIC9.59□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms