Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 RNU6-386P-201ENST00000362650 107 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 RPL21P67-201ENST00000402896 478 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 PTP4A1P1-201ENST00000420539 515 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AL138787.1-202ENST00000437804 898 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AL450023.3-201ENST00000440592 271 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AL137845.2-201ENST00000444292 988 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AC004980.3-201ENST00000447046 365 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 OTX2P1-201ENST00000450956 354 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 C1DP3-201ENST00000455013 423 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 snoU13.20-201ENST00000459180 104 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AC091544.1-201ENST00000484702 348 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 RN7SL97P-201ENST00000486780 299 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AL049874.2-201ENST00000492636 288 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 HMGB3P14-201ENST00000494195 599 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 MRPS33P2-201ENST00000507850 322 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AP002981.1-201ENST00000517692 975 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 OR1F2P-201ENST00000570470 933 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 MIR4646-201ENST00000580775 63 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AC005377.1-201ENST00000605126 456 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AC091905.4-201ENST00000623432 202 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 AC112694.2-201ENST00000623697 768 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 FRG1EP-201ENST00000634469 770 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 NLRP3P1-201ENST00000622303 1785 ntBASIC5.08□□□□□ -1.6
LHX3Q9UBR4 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LHX3Q9UBR4 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 MIR133A2-201ENST00000347538 102 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 LRRC37BP1-201ENST00000398851 714 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 AL645733.1-201ENST00000402250 217 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 PCNPP4-201ENST00000414817 517 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 AF186996.5-201ENST00000418098 904 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 ARAFP1-201ENST00000422172 605 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 RPL12P3-201ENST00000440080 396 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 RPL5P25-201ENST00000441148 775 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 AL691482.1-201ENST00000453255 87 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 RPS17P2-201ENST00000461663 408 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 SNRPCP3-201ENST00000474888 476 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 AC140172.1-201ENST00000502928 141 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 MYL12BP2-201ENST00000503948 512 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 AP000676.2-201ENST00000529711 301 ntBASIC5.07□□□□□ -1.6
LHX3Q9UBR4 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LHX3Q9UBR4 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 SCARNA15-201ENST00000607520 4325 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.06□□□□□ -1.6
LHX3Q9UBR4 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LHX3Q9UBR4 OR13C3-201ENST00000374781 1108 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms