Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 SNORA62-201ENST00000365493 153 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 RPS16P5-201ENST00000406501 404 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 RNA5SP487-201ENST00000410186 122 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 DPPA2P2-201ENST00000418220 897 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC104837.2-201ENST00000427236 424 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 HMGB3P10-201ENST00000434734 572 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 RPL5P25-201ENST00000441148 775 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 MTCYBP21-201ENST00000443300 1113 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AL157827.1-201ENST00000447622 132 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC087672.1-201ENST00000479876 766 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 RPL38P3-201ENST00000484463 213 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC012123.2-201ENST00000485809 248 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 TRBV5-2-201ENST00000489095 273 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 MTCO2P9-201ENST00000503214 694 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC138832.1-201ENST00000522871 556 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AP003102.1-201ENST00000525638 661 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 OR8Q1P-201ENST00000526467 655 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 OSBPL9P3-201ENST00000534523 595 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 MRPS21P7-201ENST00000566937 238 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC021483.2-201ENST00000567415 758 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 GARSP1-201ENST00000570895 719 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC027216.1-201ENST00000577726 685 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC090617.9-201ENST00000623751 147 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC138965.3-201ENST00000623875 498 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AL353662.3-201ENST00000625131 237 ntBASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL28A1Q2UY09 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 RNA5SP131-201ENST00000365452 119 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 RNU6-31P-201ENST00000384388 108 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC234781.4-201ENST00000419384 244 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 USP24P1-201ENST00000433802 779 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 RPS3AP38-201ENST00000435889 763 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 RPS3AP41-201ENST00000462701 778 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 RPL32P33-201ENST00000487023 394 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 C1GALT1P1-201ENST00000548895 1089 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 HMGN2P47-201ENST00000559378 272 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC007346.2-201ENST00000564816 892 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC009852.2-201ENST00000567898 485 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC068020.1-201ENST00000594215 661 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC130352.1-201ENST00000602979 661 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 TAS2R6P-201ENST00000605022 826 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC145423.1-201ENST00000605712 336 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 OR11H2-202ENST00000641517 1085 ntBASIC5.38□□□□□ -1.55
COL28A1Q2UY09 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL28A1Q2UY09 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms