Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.85□□□□□ -1.47
BDNFP23560 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
BDNFP23560 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
BDNFP23560 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
BDNFP23560 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
BDNFP23560 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
BDNFP23560 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
BDNFP23560 AL158152.1-201ENST00000602652 1435 ntBASIC5.85□□□□□ -1.47
BDNFP23560 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
BDNFP23560 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
BDNFP23560 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.85□□□□□ -1.47
BDNFP23560 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.85□□□□□ -1.47
BDNFP23560 TCP11X1-202ENST00000622971 1372 ntBASIC5.85□□□□□ -1.47
BDNFP23560 KYNUP3-201ENST00000574386 1341 ntBASIC5.85□□□□□ -1.47
BDNFP23560 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
BDNFP23560 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
BDNFP23560 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
BDNFP23560 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
BDNFP23560 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
BDNFP23560 HMGB1P10-201ENST00000395823 563 ntBASIC5.85□□□□□ -1.47
BDNFP23560 AC009804.1-201ENST00000400949 179 ntBASIC5.85□□□□□ -1.47
BDNFP23560 RPL35AP24-201ENST00000413846 330 ntBASIC5.85□□□□□ -1.47
BDNFP23560 BX510359.3-201ENST00000422168 306 ntBASIC5.85□□□□□ -1.47
BDNFP23560 AC007161.1-204ENST00000423039 460 ntBASIC5.85□□□□□ -1.47
BDNFP23560 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.85□□□□□ -1.47
BDNFP23560 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC5.85□□□□□ -1.47
BDNFP23560 RSL24D1P8-201ENST00000434442 492 ntBASIC5.85□□□□□ -1.47
BDNFP23560 TMX2P1-201ENST00000436507 708 ntBASIC5.85□□□□□ -1.47
BDNFP23560 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC5.85□□□□□ -1.47
BDNFP23560 AC092106.1-201ENST00000444291 373 ntBASIC5.85□□□□□ -1.47
BDNFP23560 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.85□□□□□ -1.47
BDNFP23560 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
BDNFP23560 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.85□□□□□ -1.47
BDNFP23560 TPRKBP1-201ENST00000456243 481 ntBASIC5.85□□□□□ -1.47
BDNFP23560 AC110749.1-201ENST00000462007 357 ntBASIC5.85□□□□□ -1.47
BDNFP23560 CABYRP1-201ENST00000465493 1045 ntBASIC5.85□□□□□ -1.47
BDNFP23560 RN7SL583P-201ENST00000475692 287 ntBASIC5.85□□□□□ -1.47
BDNFP23560 AC104687.1-201ENST00000485829 412 ntBASIC5.85□□□□□ -1.47
BDNFP23560 UBA52P7-201ENST00000486088 380 ntBASIC5.85□□□□□ -1.47
BDNFP23560 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.85□□□□□ -1.47
BDNFP23560 ST13P12-201ENST00000508958 1094 ntBASIC5.85□□□□□ -1.47
BDNFP23560 AC010285.3-201ENST00000511668 676 ntBASIC5.85□□□□□ -1.47
BDNFP23560 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.85□□□□□ -1.47
BDNFP23560 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
BDNFP23560 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.85□□□□□ -1.47
BDNFP23560 PDCD5P1-201ENST00000543528 309 ntBASIC5.85□□□□□ -1.47
BDNFP23560 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.85□□□□□ -1.47
BDNFP23560 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.85□□□□□ -1.47
BDNFP23560 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.85□□□□□ -1.47
BDNFP23560 AC000068.2-201ENST00000608816 460 ntBASIC5.85□□□□□ -1.47
BDNFP23560 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.85□□□□□ -1.47
BDNFP23560 AC100847.1-201ENST00000611316 481 ntBASIC5.85□□□□□ -1.47
BDNFP23560 AC116563.2-201ENST00000624751 535 ntBASIC5.85□□□□□ -1.47
BDNFP23560 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.85□□□□□ -1.47
BDNFP23560 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.85□□□□□ -1.47
BDNFP23560 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
BDNFP23560 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
BDNFP23560 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
BDNFP23560 AC093591.2-201ENST00000565254 3843 ntBASIC5.85□□□□□ -1.47
BDNFP23560 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
BDNFP23560 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC5.85□□□□□ -1.47
BDNFP23560 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.85□□□□□ -1.47
BDNFP23560 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.84□□□□□ -1.47
BDNFP23560 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
BDNFP23560 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
BDNFP23560 AL589826.1-201ENST00000340697 249 ntBASIC5.84□□□□□ -1.47
BDNFP23560 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.84□□□□□ -1.47
BDNFP23560 SNORA16A-201ENST00000384342 137 ntBASIC5.84□□□□□ -1.47
BDNFP23560 RNU1-77P-201ENST00000390868 162 ntBASIC5.84□□□□□ -1.47
BDNFP23560 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.84□□□□□ -1.47
BDNFP23560 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
BDNFP23560 RPSAP35-201ENST00000413753 818 ntBASIC5.84□□□□□ -1.47
BDNFP23560 SEC63P1-201ENST00000425785 1258 ntBASIC5.84□□□□□ -1.47
BDNFP23560 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
BDNFP23560 PPIAP13-201ENST00000434706 478 ntBASIC5.84□□□□□ -1.47
BDNFP23560 CYCSP12-201ENST00000437729 300 ntBASIC5.84□□□□□ -1.47
BDNFP23560 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC5.84□□□□□ -1.47
BDNFP23560 MED6P1-201ENST00000439659 713 ntBASIC5.84□□□□□ -1.47
BDNFP23560 AL357520.1-201ENST00000441557 453 ntBASIC5.84□□□□□ -1.47
BDNFP23560 HMGB3P9-201ENST00000441799 583 ntBASIC5.84□□□□□ -1.47
BDNFP23560 AC011225.1-201ENST00000457751 369 ntBASIC5.84□□□□□ -1.47
BDNFP23560 AC010683.1-201ENST00000473673 378 ntBASIC5.84□□□□□ -1.47
BDNFP23560 ATP5LP5-201ENST00000483050 299 ntBASIC5.84□□□□□ -1.47
BDNFP23560 RN7SL214P-201ENST00000487317 265 ntBASIC5.84□□□□□ -1.47
BDNFP23560 RPS4XP14-201ENST00000493072 781 ntBASIC5.84□□□□□ -1.47
BDNFP23560 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC5.84□□□□□ -1.47
BDNFP23560 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.84□□□□□ -1.47
BDNFP23560 LECT2-205ENST00000522943 574 ntTSL 3 BASIC5.84□□□□□ -1.47
BDNFP23560 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.84□□□□□ -1.47
BDNFP23560 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.84□□□□□ -1.47
BDNFP23560 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
BDNFP23560 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
BDNFP23560 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.84□□□□□ -1.47
BDNFP23560 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.84□□□□□ -1.47
BDNFP23560 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.84□□□□□ -1.47
BDNFP23560 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.84□□□□□ -1.47
BDNFP23560 DPRXP4-201ENST00000578053 568 ntBASIC5.84□□□□□ -1.47
BDNFP23560 AP005403.1-201ENST00000579720 229 ntBASIC5.84□□□□□ -1.47
BDNFP23560 AC110743.1-201ENST00000584870 478 ntBASIC5.84□□□□□ -1.47
BDNFP23560 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms