Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
DKK3Q9UBP4 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
DKK3Q9UBP4 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.48
DKK3Q9UBP4 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
DKK3Q9UBP4 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
DKK3Q9UBP4 AC012321.1-201ENST00000561622 1588 ntBASIC5.84□□□□□ -1.48
DKK3Q9UBP4 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.48
DKK3Q9UBP4 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AL359715.3-201ENST00000569267 2123 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC112255.1-201ENST00000624070 2493 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC234772.1-201ENST00000377927 937 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 SNORA5.1-201ENST00000384275 131 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 RAB9AP4-201ENST00000415230 609 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 HMGN1P36-201ENST00000446623 298 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 RPL7P55-201ENST00000450522 746 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 LRRC37A14P-201ENST00000452297 462 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 RPL23AP23-201ENST00000452590 471 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 OSTCP1-201ENST00000455507 450 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC105918.1-201ENST00000474399 838 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 EIF1P7-201ENST00000487533 337 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 MTCYBP35-201ENST00000503630 1137 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 SCARNA6.1-201ENST00000516989 238 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC067904.2-201ENST00000517322 1283 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 IGLV3-30-201ENST00000524362 298 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC004923.2-201ENST00000529649 369 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC090424.1-201ENST00000535243 736 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC126615.2-201ENST00000553003 515 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 IGBP1P1-201ENST00000554337 1009 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC010547.6-201ENST00000571789 193 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC008751.2-201ENST00000597885 980 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 MTCO3P22-201ENST00000603219 784 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC016769.4-201ENST00000616893 535 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC087565.3-203ENST00000641018 837 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AL034546.1-201ENST00000623740 3693 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 ADAM24P-201ENST00000398655 2101 ntBASIC5.83□□□□□ -1.48
DKK3Q9UBP4 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.83□□□□□ -1.48
DKK3Q9UBP4 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.82□□□□□ -1.48
DKK3Q9UBP4 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 TMSB4XP4-201ENST00000323496 618 ntBASIC5.82□□□□□ -1.48
DKK3Q9UBP4 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 RNU4-44P-201ENST00000363050 141 ntBASIC5.82□□□□□ -1.48
DKK3Q9UBP4 RNA5SP394-201ENST00000364216 119 ntBASIC5.82□□□□□ -1.48
DKK3Q9UBP4 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC5.82□□□□□ -1.48
DKK3Q9UBP4 RNU6-1320P-201ENST00000390838 107 ntBASIC5.82□□□□□ -1.48
DKK3Q9UBP4 RNU6-1269P-201ENST00000391139 107 ntBASIC5.82□□□□□ -1.48
DKK3Q9UBP4 HMGB1P20-201ENST00000402555 677 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms