Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 AC011755.1-201ENST00000623763 2049 ntBASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
TM9SF3Q9HD45 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 RNU4-44P-201ENST00000363050 141 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 HSPA8P15-201ENST00000401676 786 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 TCEA1P3-201ENST00000443005 880 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 SERPINA7P1-201ENST00000443077 631 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 IGBP1P3-201ENST00000447449 1000 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AC022431.1-201ENST00000450941 438 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AZGP1P2-201ENST00000454506 345 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AC108161.1-201ENST00000461060 402 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 RPL7P40-201ENST00000481703 745 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AC023424.1-201ENST00000496058 459 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AC004980.4-201ENST00000513375 203 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 RNU6-513P-201ENST00000516104 104 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 OR8A2P-201ENST00000528631 952 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AC096553.1-201ENST00000605169 829 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AC079097.1-201ENST00000512187 1399 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AC003973.3-201ENST00000624863 2822 ntBASIC5.29□□□□□ -1.56
TM9SF3Q9HD45 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AL360270.2-201ENST00000562952 5985 ntBASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 RNU6-697P-201ENST00000363348 107 ntBASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 NIPA2P1-201ENST00000426223 976 ntBASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AC104634.1-201ENST00000452720 462 ntBASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 ENPP7P11-201ENST00000505915 627 ntBASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 RNA5SP228-201ENST00000516232 133 ntBASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AC068993.1-201ENST00000546724 589 ntBASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 MIR3934-201ENST00000579806 107 ntBASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 MIR4480-201ENST00000582492 71 ntBASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AP000769.2-201ENST00000602344 396 ntBASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 FAM25E-202ENST00000608562 189 ntBASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AL354950.1-201ENST00000614150 568 ntBASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.28□□□□□ -1.56
TM9SF3Q9HD45 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms