Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 MTCO1P11-201ENST00000429111 1528 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC017002.4-201ENST00000604721 1525 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.66□□□□□ -1.66
NKX3-1Q99801 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
NKX3-1Q99801 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
NKX3-1Q99801 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 SNORA51.1-201ENST00000363243 140 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 RNA5SP131-201ENST00000365452 119 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC007618.1-201ENST00000366455 732 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 RN7SKP206-201ENST00000410823 293 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 ARL2BPP3-201ENST00000421226 480 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 RPL34P3-201ENST00000421454 338 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC013410.2-201ENST00000422627 201 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 AL662874.1-201ENST00000426065 230 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 RPL7AP49-201ENST00000429522 581 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 AL591438.1-201ENST00000433508 581 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 ELOCP3-201ENST00000439303 348 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 SCAND3P1-201ENST00000439854 1060 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AL513321.1-201ENST00000441175 761 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 SEPT7P3-201ENST00000455017 621 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 RPSAP39-201ENST00000467439 883 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 OR9N1P-202ENST00000494289 481 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 RN7SL101P-201ENST00000496350 279 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC015864.1-201ENST00000496512 544 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
NKX3-1Q99801 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 RPL7L1P4-201ENST00000513004 707 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 HMGN1P15-201ENST00000513870 295 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC103833.1-201ENST00000517442 172 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 VTA1P2-201ENST00000520205 911 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AP000648.1-201ENST00000529682 397 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC027026.1-201ENST00000532323 742 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AL031601.1-201ENST00000605702 394 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC105105.5-201ENST00000622635 1294 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
NKX3-1Q99801 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
NKX3-1Q99801 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
NKX3-1Q99801 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 AC063976.2-201ENST00000425667 3556 ntBASIC4.66□□□□□ -1.66
NKX3-1Q99801 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
NKX3-1Q99801 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
NKX3-1Q99801 EEF1A1P14-201ENST00000421195 1376 ntBASIC4.65□□□□□ -1.66
NKX3-1Q99801 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
NKX3-1Q99801 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
NKX3-1Q99801 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
NKX3-1Q99801 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.65□□□□□ -1.66
NKX3-1Q99801 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
NKX3-1Q99801 PCAT14-202ENST00000627127 3935 ntBASIC4.65□□□□□ -1.66
NKX3-1Q99801 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
NKX3-1Q99801 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
NKX3-1Q99801 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
NKX3-1Q99801 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
NKX3-1Q99801 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 RN7SKP292-201ENST00000365522 317 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 OR7E101P-201ENST00000400428 513 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 GSTA12P-201ENST00000402398 508 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 AL512422.1-201ENST00000407033 553 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC4.65□□□□□ -1.67
NKX3-1Q99801 AC046176.1-201ENST00000435260 1170 ntBASIC4.65□□□□□ -1.67
NKX3-1Q99801 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 169.8 ms