Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 AC069307.1-201ENST00000602820 447 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 IMMP1LP3-201ENST00000604197 224 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 AC011626.1-201ENST00000604710 562 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 AL596275.2-204ENST00000641628 552 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 AL596275.2-206ENST00000641957 626 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SKA3Q8IX90 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SKA3Q8IX90 AC022417.1-201ENST00000624768 1303 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SKA3Q8IX90 TRIM51GP-201ENST00000534741 1350 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SKA3Q8IX90 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
SKA3Q8IX90 AL022393.1-201ENST00000625142 1677 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SKA3Q8IX90 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SKA3Q8IX90 AC092747.4-201ENST00000620519 1861 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SKA3Q8IX90 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SKA3Q8IX90 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 AC005294.1-201ENST00000355509 281 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 SNORA51.1-201ENST00000363243 140 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 SNORA48.4-201ENST00000391089 134 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 AC007068.1-201ENST00000396690 844 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 RPL21P67-201ENST00000402896 478 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 RN7SKP247-201ENST00000411094 308 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 AL356968.2-201ENST00000412769 1257 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SKA3Q8IX90 SLC35E1P1-201ENST00000419313 864 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 HSPD1P12-201ENST00000429127 1069 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 CLUHP1-201ENST00000435012 1190 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 AL606490.1-201ENST00000452266 765 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 SEPT7P6-201ENST00000469999 1143 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 RPS21P4-201ENST00000487122 248 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 AC015864.1-201ENST00000496512 544 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 ARL4AP1-201ENST00000503220 705 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 RPS4XP20-201ENST00000505751 772 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 AC016559.2-201ENST00000510759 359 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 BNIP3P1-201ENST00000547295 580 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 AC009303.3-201ENST00000591103 736 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 AC015871.5-202ENST00000623252 701 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SKA3Q8IX90 AC114947.2-201ENST00000565748 2125 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SKA3Q8IX90 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 CR382285.2-201ENST00000624662 1495 ntBASIC4.61□□□□□ -1.67
SKA3Q8IX90 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.61□□□□□ -1.67
SKA3Q8IX90 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SKA3Q8IX90 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC023421.1-201ENST00000590535 1785 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SKA3Q8IX90 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SKA3Q8IX90 LINC01355-201ENST00000566551 5444 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SKA3Q8IX90 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SKA3Q8IX90 MIR589-201ENST00000385238 99 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 MIR1286-201ENST00000408112 78 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 Z68694.1-201ENST00000413929 841 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AL358176.3-201ENST00000420757 454 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC108075.1-201ENST00000424692 529 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SKA3Q8IX90 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC4.6□□□□□ -1.67
SKA3Q8IX90 OR6C72P-201ENST00000451403 892 ntBASIC4.6□□□□□ -1.67
SKA3Q8IX90 OR2AF1P-201ENST00000454899 889 ntBASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms