Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CR381572.2-201ENST00000624852 397 ntBASIC6.97□□□□□ -1.29
MSH6P52701 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC6.97□□□□□ -1.29
MSH6P52701 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSH6P52701 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.97□□□□□ -1.29
MSH6P52701 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
MSH6P52701 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC6.97□□□□□ -1.29
MSH6P52701 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSH6P52701 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
MSH6P52701 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSH6P52701 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.97□□□□□ -1.29
MSH6P52701 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
MSH6P52701 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
MSH6P52701 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSH6P52701 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSH6P52701 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
MSH6P52701 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
MSH6P52701 AC004158.1-201ENST00000564508 4319 ntBASIC6.97□□□□□ -1.29
MSH6P52701 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.97□□□□□ -1.29
MSH6P52701 AC079097.1-201ENST00000512187 1399 ntBASIC6.96□□□□□ -1.29
MSH6P52701 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC6.96□□□□□ -1.29
MSH6P52701 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
MSH6P52701 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
MSH6P52701 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC6.96□□□□□ -1.29
MSH6P52701 AL136116.2-201ENST00000404020 785 ntBASIC6.96□□□□□ -1.29
MSH6P52701 SNORA77-201ENST00000408716 125 ntBASIC6.96□□□□□ -1.29
MSH6P52701 RPS27AP12-201ENST00000429552 465 ntBASIC6.96□□□□□ -1.29
MSH6P52701 ARL1-211ENST00000551828 776 ntTSL 5 BASIC6.96□□□□□ -1.29
MSH6P52701 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC6.96□□□□□ -1.29
MSH6P52701 AC025857.2-201ENST00000602711 238 ntBASIC6.96□□□□□ -1.29
MSH6P52701 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC6.96□□□□□ -1.29
MSH6P52701 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.29
MSH6P52701 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
MSH6P52701 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
MSH6P52701 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC6.96□□□□□ -1.3
MSH6P52701 ZNF402P-201ENST00000404435 3100 ntBASIC6.96□□□□□ -1.3
MSH6P52701 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.96□□□□□ -1.3
MSH6P52701 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.96□□□□□ -1.3
MSH6P52701 AC079298.1-201ENST00000625026 1619 ntBASIC6.96□□□□□ -1.3
MSH6P52701 RNU1-64P-201ENST00000365443 163 ntBASIC6.95□□□□□ -1.3
MSH6P52701 OR2B7P-201ENST00000429302 934 ntBASIC6.95□□□□□ -1.3
MSH6P52701 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
MSH6P52701 AL359073.1-201ENST00000448036 403 ntBASIC6.95□□□□□ -1.3
MSH6P52701 RPL7P41-201ENST00000485823 957 ntBASIC6.95□□□□□ -1.3
MSH6P52701 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.95□□□□□ -1.3
MSH6P52701 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.95□□□□□ -1.3
MSH6P52701 OR8Q1P-201ENST00000526467 655 ntBASIC6.95□□□□□ -1.3
MSH6P52701 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC6.95□□□□□ -1.3
MSH6P52701 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC6.95□□□□□ -1.3
MSH6P52701 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC6.95□□□□□ -1.3
MSH6P52701 AP000756.2-201ENST00000624168 2567 ntBASIC6.95□□□□□ -1.3
MSH6P52701 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
MSH6P52701 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.95□□□□□ -1.3
MSH6P52701 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
MSH6P52701 MSL3P1-202ENST00000440028 1468 ntBASIC6.95□□□□□ -1.3
MSH6P52701 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
MSH6P52701 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.95□□□□□ -1.3
MSH6P52701 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
MSH6P52701 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSH6P52701 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
MSH6P52701 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.95□□□□□ -1.3
MSH6P52701 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSH6P52701 AC068446.1-201ENST00000556425 1549 ntBASIC6.95□□□□□ -1.3
MSH6P52701 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.95□□□□□ -1.3
MSH6P52701 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC6.95□□□□□ -1.3
MSH6P52701 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
MSH6P52701 RNA5SP28-201ENST00000363841 119 ntBASIC6.95□□□□□ -1.3
MSH6P52701 RN7SKP153-201ENST00000365026 316 ntBASIC6.95□□□□□ -1.3
MSH6P52701 MIR589-201ENST00000385238 99 ntBASIC6.95□□□□□ -1.3
MSH6P52701 AL591848.1-201ENST00000413092 322 ntBASIC6.95□□□□□ -1.3
MSH6P52701 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
MSH6P52701 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC6.95□□□□□ -1.3
MSH6P52701 AC016831.4-201ENST00000438302 307 ntBASIC6.95□□□□□ -1.3
MSH6P52701 MED28P3-201ENST00000444288 531 ntBASIC6.95□□□□□ -1.3
MSH6P52701 NOP56P2-201ENST00000447491 769 ntBASIC6.95□□□□□ -1.3
MSH6P52701 RPL7P32-201ENST00000457119 744 ntBASIC6.95□□□□□ -1.3
MSH6P52701 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC6.95□□□□□ -1.3
MSH6P52701 SCARNA22-201ENST00000503991 125 ntBASIC6.95□□□□□ -1.3
MSH6P52701 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC6.95□□□□□ -1.3
MSH6P52701 AC106785.1-201ENST00000565935 262 ntBASIC6.95□□□□□ -1.3
MSH6P52701 MIR3939-201ENST00000582614 106 ntBASIC6.95□□□□□ -1.3
MSH6P52701 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC6.95□□□□□ -1.3
MSH6P52701 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
MSH6P52701 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC6.95□□□□□ -1.3
MSH6P52701 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC6.94□□□□□ -1.3
MSH6P52701 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
MSH6P52701 U3.28-201ENST00000391249 210 ntBASIC6.94□□□□□ -1.3
MSH6P52701 AC025750.1-201ENST00000399891 379 ntBASIC6.94□□□□□ -1.3
MSH6P52701 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
MSH6P52701 RPEP3-201ENST00000425462 676 ntBASIC6.94□□□□□ -1.3
MSH6P52701 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC6.94□□□□□ -1.3
MSH6P52701 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC6.94□□□□□ -1.3
MSH6P52701 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC6.94□□□□□ -1.3
MSH6P52701 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.94□□□□□ -1.3
MSH6P52701 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
MSH6P52701 AC136777.2-201ENST00000522979 358 ntBASIC6.94□□□□□ -1.3
MSH6P52701 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC6.94□□□□□ -1.3
MSH6P52701 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC6.94□□□□□ -1.3
MSH6P52701 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC6.94□□□□□ -1.3
MSH6P52701 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC6.94□□□□□ -1.3
MSH6P52701 AC108738.1-201ENST00000603703 237 ntBASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms