Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC016772.1-201ENST00000444170 1261 ntBASIC4.91□□□□□ -1.62
SOX3P41225 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SOX3P41225 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SOX3P41225 RN7SL515P-201ENST00000463999 297 ntBASIC4.91□□□□□ -1.62
SOX3P41225 AC005532.2-201ENST00000467154 373 ntBASIC4.91□□□□□ -1.62
SOX3P41225 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.91□□□□□ -1.62
SOX3P41225 RN7SL423P-201ENST00000486202 304 ntBASIC4.91□□□□□ -1.62
SOX3P41225 RPL37AP8-201ENST00000494116 276 ntBASIC4.91□□□□□ -1.62
SOX3P41225 AC023424.1-201ENST00000496058 459 ntBASIC4.91□□□□□ -1.62
SOX3P41225 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SOX3P41225 RNU6-467P-201ENST00000517027 110 ntBASIC4.91□□□□□ -1.62
SOX3P41225 RNA5SP373-201ENST00000517271 95 ntBASIC4.91□□□□□ -1.62
SOX3P41225 SEC11B-201ENST00000518383 499 ntBASIC4.91□□□□□ -1.62
SOX3P41225 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.91□□□□□ -1.62
SOX3P41225 HAUS8P1-201ENST00000549005 542 ntBASIC4.91□□□□□ -1.62
SOX3P41225 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.91□□□□□ -1.62
SOX3P41225 AC127381.1-201ENST00000555979 939 ntBASIC4.91□□□□□ -1.62
SOX3P41225 AC051619.2-201ENST00000559063 397 ntBASIC4.91□□□□□ -1.62
SOX3P41225 AC009027.1-201ENST00000604510 479 ntBASIC4.91□□□□□ -1.62
SOX3P41225 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.91□□□□□ -1.62
SOX3P41225 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC4.91□□□□□ -1.62
SOX3P41225 AC016769.4-201ENST00000616893 535 ntBASIC4.91□□□□□ -1.62
SOX3P41225 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC4.91□□□□□ -1.62
SOX3P41225 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SOX3P41225 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SOX3P41225 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SOX3P41225 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
SOX3P41225 Z95331.1-201ENST00000623075 23112 ntBASIC4.91□□□□□ -1.62
SOX3P41225 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SOX3P41225 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
SOX3P41225 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
SOX3P41225 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
SOX3P41225 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
SOX3P41225 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
SOX3P41225 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.9□□□□□ -1.62
SOX3P41225 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SOX3P41225 AL603750.1-201ENST00000624216 1717 ntBASIC4.9□□□□□ -1.62
SOX3P41225 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SOX3P41225 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SOX3P41225 MIR365B-201ENST00000362317 111 ntBASIC4.9□□□□□ -1.63
SOX3P41225 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SOX3P41225 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC4.9□□□□□ -1.63
SOX3P41225 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.9□□□□□ -1.63
SOX3P41225 DUTP5-201ENST00000406790 469 ntBASIC4.9□□□□□ -1.63
SOX3P41225 SPTLC1P2-201ENST00000407089 121 ntBASIC4.9□□□□□ -1.63
SOX3P41225 RN7SKP273-201ENST00000411392 314 ntBASIC4.9□□□□□ -1.63
SOX3P41225 CTSL3P-202ENST00000412179 788 ntBASIC4.9□□□□□ -1.63
SOX3P41225 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.9□□□□□ -1.63
SOX3P41225 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SOX3P41225 FAR1P1-201ENST00000427163 934 ntBASIC4.9□□□□□ -1.63
SOX3P41225 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.9□□□□□ -1.63
SOX3P41225 MTND4P15-201ENST00000437913 1033 ntBASIC4.9□□□□□ -1.63
SOX3P41225 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.9□□□□□ -1.63
SOX3P41225 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.9□□□□□ -1.63
SOX3P41225 EEF1B2P5-201ENST00000444820 548 ntBASIC4.9□□□□□ -1.63
SOX3P41225 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.9□□□□□ -1.63
SOX3P41225 RPS18P6-201ENST00000476880 458 ntBASIC4.9□□□□□ -1.63
SOX3P41225 RPL7P40-201ENST00000481703 745 ntBASIC4.9□□□□□ -1.63
SOX3P41225 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC4.9□□□□□ -1.63
SOX3P41225 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC4.9□□□□□ -1.63
SOX3P41225 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.9□□□□□ -1.63
SOX3P41225 EIF3KP3-201ENST00000514461 639 ntBASIC4.9□□□□□ -1.63
SOX3P41225 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.9□□□□□ -1.63
SOX3P41225 AC100784.1-201ENST00000522790 310 ntBASIC4.9□□□□□ -1.63
SOX3P41225 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.9□□□□□ -1.63
SOX3P41225 OR11J2P-201ENST00000555298 907 ntBASIC4.9□□□□□ -1.63
SOX3P41225 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC4.9□□□□□ -1.63
SOX3P41225 AC005252.1-201ENST00000604518 1063 ntBASIC4.9□□□□□ -1.63
SOX3P41225 RPL21P136-201ENST00000605378 396 ntBASIC4.9□□□□□ -1.63
SOX3P41225 AC244107.2-201ENST00000611773 76 ntBASIC4.9□□□□□ -1.63
SOX3P41225 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC4.9□□□□□ -1.63
SOX3P41225 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
SOX3P41225 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.9□□□□□ -1.63
SOX3P41225 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC4.9□□□□□ -1.63
SOX3P41225 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.9□□□□□ -1.63
SOX3P41225 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.9□□□□□ -1.63
SOX3P41225 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SOX3P41225 AC104623.2-202ENST00000623477 4002 ntBASIC4.9□□□□□ -1.63
SOX3P41225 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
SOX3P41225 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.9□□□□□ -1.63
SOX3P41225 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.9□□□□□ -1.63
SOX3P41225 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.9□□□□□ -1.63
SOX3P41225 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.9□□□□□ -1.63
SOX3P41225 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SOX3P41225 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SOX3P41225 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SOX3P41225 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SOX3P41225 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SOX3P41225 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.89□□□□□ -1.63
SOX3P41225 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SOX3P41225 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
SOX3P41225 RPL23P2-201ENST00000320371 421 ntBASIC4.89□□□□□ -1.63
SOX3P41225 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SOX3P41225 RNU1-19P-201ENST00000363306 165 ntBASIC4.89□□□□□ -1.63
SOX3P41225 MIR105-2-201ENST00000385083 81 ntBASIC4.89□□□□□ -1.63
SOX3P41225 SNORA40.4-201ENST00000390971 128 ntBASIC4.89□□□□□ -1.63
SOX3P41225 SNORA48.4-201ENST00000391089 134 ntBASIC4.89□□□□□ -1.63
SOX3P41225 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.89□□□□□ -1.63
SOX3P41225 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
SOX3P41225 AMZ2P2-201ENST00000406819 1057 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms