Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
BRCA1P38398 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC5.95□□□□□ -1.46
BRCA1P38398 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
BRCA1P38398 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
BRCA1P38398 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.95□□□□□ -1.46
BRCA1P38398 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5.95□□□□□ -1.46
BRCA1P38398 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.95□□□□□ -1.46
BRCA1P38398 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.95□□□□□ -1.46
BRCA1P38398 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.95□□□□□ -1.46
BRCA1P38398 uc_338.7-201ENST00000621834 124 ntBASIC5.95□□□□□ -1.46
BRCA1P38398 AC112200.1-201ENST00000625015 234 ntBASIC5.95□□□□□ -1.46
BRCA1P38398 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.95□□□□□ -1.46
BRCA1P38398 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
BRCA1P38398 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
BRCA1P38398 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
BRCA1P38398 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
BRCA1P38398 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
BRCA1P38398 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.94□□□□□ -1.46
BRCA1P38398 Z95114.1-201ENST00000624264 14574 ntBASIC5.94□□□□□ -1.46
BRCA1P38398 RNU1-82P-201ENST00000390851 165 ntBASIC5.94□□□□□ -1.46
BRCA1P38398 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
BRCA1P38398 AC023424.1-201ENST00000496058 459 ntBASIC5.94□□□□□ -1.46
BRCA1P38398 AC025164.1-201ENST00000496249 478 ntBASIC5.94□□□□□ -1.46
BRCA1P38398 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.94□□□□□ -1.46
BRCA1P38398 AC022360.1-201ENST00000521058 340 ntBASIC5.94□□□□□ -1.46
BRCA1P38398 AC073091.2-201ENST00000603205 907 ntBASIC5.94□□□□□ -1.46
BRCA1P38398 AL352984.2-202ENST00000613699 155 ntBASIC5.94□□□□□ -1.46
BRCA1P38398 AC069542.2-201ENST00000624816 216 ntBASIC5.94□□□□□ -1.46
BRCA1P38398 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.94□□□□□ -1.46
BRCA1P38398 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC5.94□□□□□ -1.46
BRCA1P38398 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
BRCA1P38398 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.94□□□□□ -1.46
BRCA1P38398 AC012213.2-201ENST00000562917 4597 ntBASIC5.94□□□□□ -1.46
BRCA1P38398 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
BRCA1P38398 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
BRCA1P38398 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
BRCA1P38398 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.94□□□□□ -1.46
BRCA1P38398 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC5.94□□□□□ -1.46
BRCA1P38398 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC5.94□□□□□ -1.46
BRCA1P38398 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
BRCA1P38398 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
BRCA1P38398 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
BRCA1P38398 AL035079.1-201ENST00000405210 287 ntBASIC5.94□□□□□ -1.46
BRCA1P38398 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.94□□□□□ -1.46
BRCA1P38398 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.94□□□□□ -1.46
BRCA1P38398 PSAT1P4-201ENST00000466500 526 ntBASIC5.94□□□□□ -1.46
BRCA1P38398 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.94□□□□□ -1.46
BRCA1P38398 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC5.94□□□□□ -1.46
BRCA1P38398 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.94□□□□□ -1.46
BRCA1P38398 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.94□□□□□ -1.46
BRCA1P38398 BUD31P1-201ENST00000521828 359 ntBASIC5.94□□□□□ -1.46
BRCA1P38398 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.94□□□□□ -1.46
BRCA1P38398 AC022726.1-201ENST00000587475 207 ntBASIC5.94□□□□□ -1.46
BRCA1P38398 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.94□□□□□ -1.46
BRCA1P38398 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
BRCA1P38398 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
BRCA1P38398 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC5.94□□□□□ -1.46
BRCA1P38398 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
BRCA1P38398 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.93□□□□□ -1.46
BRCA1P38398 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
BRCA1P38398 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
BRCA1P38398 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
BRCA1P38398 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.93□□□□□ -1.46
BRCA1P38398 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC5.93□□□□□ -1.46
BRCA1P38398 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
BRCA1P38398 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
BRCA1P38398 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
BRCA1P38398 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
BRCA1P38398 RNA5SP223-201ENST00000365174 120 ntBASIC5.93□□□□□ -1.46
BRCA1P38398 SNORA70C-201ENST00000384538 135 ntBASIC5.93□□□□□ -1.46
BRCA1P38398 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.93□□□□□ -1.46
BRCA1P38398 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
BRCA1P38398 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.93□□□□□ -1.46
BRCA1P38398 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.93□□□□□ -1.46
BRCA1P38398 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.93□□□□□ -1.46
BRCA1P38398 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.93□□□□□ -1.46
BRCA1P38398 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.93□□□□□ -1.46
BRCA1P38398 AC106806.2-201ENST00000509365 500 ntBASIC5.93□□□□□ -1.46
BRCA1P38398 NDUFB4P12-201ENST00000513465 390 ntBASIC5.93□□□□□ -1.46
BRCA1P38398 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
BRCA1P38398 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC5.93□□□□□ -1.46
BRCA1P38398 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.93□□□□□ -1.46
BRCA1P38398 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.93□□□□□ -1.46
BRCA1P38398 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
BRCA1P38398 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
BRCA1P38398 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
BRCA1P38398 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
BRCA1P38398 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
BRCA1P38398 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
BRCA1P38398 RN7SKP185-201ENST00000362813 326 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 SNORA73.1-201ENST00000363107 205 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 RN7SKP224-201ENST00000364140 325 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 ATP5F1P2-201ENST00000398143 760 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 RN7SKP267-201ENST00000410381 285 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 RPL34P6-201ENST00000432390 345 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 RPL23AP93-201ENST00000440847 484 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 AC073358.1-201ENST00000505671 684 ntBASIC5.92□□□□□ -1.46
BRCA1P38398 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
BRCA1P38398 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.92□□□□□ -1.46
BRCA1P38398 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms