Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SNORA48.7-201ENST00000391302 135 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 AL136116.2-201ENST00000404020 785 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 AC079809.1-201ENST00000415468 276 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 AC010733.1-201ENST00000451515 401 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 AC020779.1-201ENST00000478757 796 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.81□□□□□ -1.64
COL5A1P20908 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A1P20908 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.81□□□□□ -1.64
COL5A1P20908 GLRXP2-201ENST00000555594 321 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
COL5A1P20908 AC021483.2-201ENST00000567415 758 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 AC125494.2-201ENST00000602431 657 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 AC011944.2-201ENST00000624440 683 ntBASIC4.81□□□□□ -1.64
COL5A1P20908 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.81□□□□□ -1.64
COL5A1P20908 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.81□□□□□ -1.64
COL5A1P20908 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
COL5A1P20908 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A1P20908 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL5A1P20908 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A1P20908 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL5A1P20908 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A1P20908 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A1P20908 ECM1P2-201ENST00000503354 1577 ntBASIC4.8□□□□□ -1.64
COL5A1P20908 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.8□□□□□ -1.64
COL5A1P20908 MIR589-201ENST00000385238 99 ntBASIC4.8□□□□□ -1.64
COL5A1P20908 AL035079.1-201ENST00000405210 287 ntBASIC4.8□□□□□ -1.64
COL5A1P20908 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.8□□□□□ -1.64
COL5A1P20908 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.8□□□□□ -1.64
COL5A1P20908 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A1P20908 AC046176.1-201ENST00000435260 1170 ntBASIC4.8□□□□□ -1.64
COL5A1P20908 AC073143.1-201ENST00000436316 395 ntBASIC4.8□□□□□ -1.64
COL5A1P20908 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.8□□□□□ -1.64
COL5A1P20908 PPIAP21-201ENST00000464473 501 ntBASIC4.8□□□□□ -1.64
COL5A1P20908 RPL12P20-201ENST00000475538 479 ntBASIC4.8□□□□□ -1.64
COL5A1P20908 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.8□□□□□ -1.64
COL5A1P20908 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.8□□□□□ -1.64
COL5A1P20908 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.8□□□□□ -1.64
COL5A1P20908 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.8□□□□□ -1.64
COL5A1P20908 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.8□□□□□ -1.64
COL5A1P20908 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.8□□□□□ -1.64
COL5A1P20908 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC4.8□□□□□ -1.64
COL5A1P20908 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.8□□□□□ -1.64
COL5A1P20908 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
COL5A1P20908 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A1P20908 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A1P20908 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A1P20908 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
COL5A1P20908 AC104118.1-201ENST00000607625 1589 ntBASIC4.8□□□□□ -1.64
COL5A1P20908 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL5A1P20908 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
COL5A1P20908 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.8□□□□□ -1.64
COL5A1P20908 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC4.79□□□□□ -1.64
COL5A1P20908 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC4.79□□□□□ -1.64
COL5A1P20908 AC099654.2-201ENST00000433031 1980 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.79□□□□□ -1.64
COL5A1P20908 ALB-214ENST00000509063 1911 ntTSL 5 BASIC4.79□□□□□ -1.64
COL5A1P20908 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
COL5A1P20908 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
COL5A1P20908 RNU4-25P-201ENST00000410569 230 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 RN7SKP106-201ENST00000410832 272 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 GAPDHP14-201ENST00000450472 937 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 OR52E3P-201ENST00000452083 936 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.79□□□□□ -1.64
COL5A1P20908 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.79□□□□□ -1.64
COL5A1P20908 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC4.79□□□□□ -1.64
COL5A1P20908 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC4.79□□□□□ -1.64
COL5A1P20908 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC4.79□□□□□ -1.64
COL5A1P20908 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.79□□□□□ -1.64
COL5A1P20908 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.79□□□□□ -1.64
COL5A1P20908 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.79□□□□□ -1.64
COL5A1P20908 AL161637.1-201ENST00000622380 412 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.79□□□□□ -1.64
COL5A1P20908 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 NCLP2-201ENST00000416078 1462 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
COL5A1P20908 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.79□□□□□ -1.64
COL5A1P20908 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC4.79□□□□□ -1.64
COL5A1P20908 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
COL5A1P20908 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL5A1P20908 RN7SKP227-201ENST00000364445 330 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 OR1L6-202ENST00000373684 1044 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 RNA5SP241-201ENST00000391326 114 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.79□□□□□ -1.64
COL5A1P20908 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.79□□□□□ -1.64
COL5A1P20908 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.79□□□□□ -1.64
COL5A1P20908 snoU13.1-201ENST00000459157 104 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 RPL7AP10-201ENST00000481016 791 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 NIP7P2-201ENST00000485801 544 ntBASIC4.79□□□□□ -1.64
COL5A1P20908 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC4.79□□□□□ -1.64
COL5A1P20908 AC025674.1-201ENST00000507074 324 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms