Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 AC026951.1-201ENST00000559530 2459 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC6.53□□□□□ -1.36
COL3A1P02461 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 BMPR1APS1-201ENST00000403332 1598 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC6.53□□□□□ -1.36
COL3A1P02461 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 AC010928.1-201ENST00000592477 1447 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL3A1P02461 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC6.53□□□□□ -1.36
COL3A1P02461 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.53□□□□□ -1.36
COL3A1P02461 AL049745.1-201ENST00000433953 286 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 AC011753.3-201ENST00000443436 406 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC6.53□□□□□ -1.36
COL3A1P02461 MTCYBP11-201ENST00000447254 1109 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC6.53□□□□□ -1.36
COL3A1P02461 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 AC108751.3-201ENST00000461814 1020 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 RN7SL244P-201ENST00000493405 297 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 AC093815.1-201ENST00000508637 280 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 OR51K1P-201ENST00000510214 950 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.53□□□□□ -1.36
COL3A1P02461 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 AC063949.1-201ENST00000552900 865 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 EDDM3DP-201ENST00000554692 434 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC6.53□□□□□ -1.36
COL3A1P02461 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC6.53□□□□□ -1.36
COL3A1P02461 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC6.53□□□□□ -1.36
COL3A1P02461 AC011487.3-201ENST00000593607 453 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC6.53□□□□□ -1.36
COL3A1P02461 AC012557.1-201ENST00000607115 611 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 AC018754.1-201ENST00000607486 925 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL3A1P02461 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC6.53□□□□□ -1.36
COL3A1P02461 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.53□□□□□ -1.36
COL3A1P02461 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.36
COL3A1P02461 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL3A1P02461 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC6.52□□□□□ -1.37
COL3A1P02461 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COL3A1P02461 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC6.52□□□□□ -1.37
COL3A1P02461 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL3A1P02461 AL627171.1-201ENST00000618845 1308 ntBASIC6.52□□□□□ -1.37
COL3A1P02461 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
COL3A1P02461 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
COL3A1P02461 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL3A1P02461 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
COL3A1P02461 PLEKHG1-201ENST00000358517 7138 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
COL3A1P02461 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL3A1P02461 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
COL3A1P02461 SNORA72.3-201ENST00000365074 132 ntBASIC6.52□□□□□ -1.37
COL3A1P02461 Z97832.1-201ENST00000402490 328 ntBASIC6.52□□□□□ -1.37
COL3A1P02461 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC6.52□□□□□ -1.37
COL3A1P02461 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC6.52□□□□□ -1.37
COL3A1P02461 AC019050.1-201ENST00000418508 492 ntBASIC6.52□□□□□ -1.37
COL3A1P02461 QRSL1P2-201ENST00000418582 964 ntBASIC6.52□□□□□ -1.37
COL3A1P02461 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC6.52□□□□□ -1.37
COL3A1P02461 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC6.52□□□□□ -1.37
COL3A1P02461 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC6.52□□□□□ -1.37
COL3A1P02461 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC6.52□□□□□ -1.37
COL3A1P02461 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC6.52□□□□□ -1.37
COL3A1P02461 AC245028.2-201ENST00000458673 253 ntBASIC6.52□□□□□ -1.37
COL3A1P02461 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.52□□□□□ -1.37
COL3A1P02461 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC6.52□□□□□ -1.37
COL3A1P02461 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.52□□□□□ -1.37
COL3A1P02461 RNA5SP228-201ENST00000516232 133 ntBASIC6.52□□□□□ -1.37
COL3A1P02461 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC6.52□□□□□ -1.37
COL3A1P02461 AC008676.3-201ENST00000521237 435 ntBASIC6.52□□□□□ -1.37
COL3A1P02461 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC6.52□□□□□ -1.37
COL3A1P02461 AL110118.1-201ENST00000553543 400 ntBASIC6.52□□□□□ -1.37
COL3A1P02461 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC6.52□□□□□ -1.37
COL3A1P02461 AC091042.1-201ENST00000579213 173 ntBASIC6.52□□□□□ -1.37
COL3A1P02461 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC6.52□□□□□ -1.37
COL3A1P02461 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC6.52□□□□□ -1.37
COL3A1P02461 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC6.52□□□□□ -1.37
COL3A1P02461 AC098935.2-201ENST00000604222 466 ntBASIC6.52□□□□□ -1.37
COL3A1P02461 AC026979.4-201ENST00000606555 645 ntBASIC6.52□□□□□ -1.37
COL3A1P02461 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC6.52□□□□□ -1.37
COL3A1P02461 BX005214.3-202ENST00000619809 325 ntBASIC6.52□□□□□ -1.37
COL3A1P02461 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
COL3A1P02461 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
COL3A1P02461 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC6.51□□□□□ -1.37
COL3A1P02461 AC022417.1-201ENST00000624768 1303 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 AL669831.5-218ENST00000591702 1873 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC6.51□□□□□ -1.37
COL3A1P02461 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL3A1P02461 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL3A1P02461 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL3A1P02461 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL3A1P02461 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL3A1P02461 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COL3A1P02461 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
COL3A1P02461 GAPDHP15-201ENST00000398586 975 ntBASIC6.51□□□□□ -1.37
COL3A1P02461 ARL4AP5-201ENST00000404372 599 ntBASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms