Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC090804.1-201ENST00000448870 490 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC239798.3-201ENST00000454459 408 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 CABYRP1-201ENST00000465493 1045 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC023424.1-201ENST00000496058 459 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 NIFKP7-201ENST00000503365 834 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC109464.1-201ENST00000511091 819 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC027338.1-201ENST00000514840 825 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 LSM3P2-201ENST00000551246 273 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 FAM106CP-201ENST00000582212 507 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 H3F3BP2-201ENST00000583907 357 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC242628.1-201ENST00000606810 391 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC004775.1-201ENST00000607389 753 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC005021.1-201ENST00000608730 355 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 Z95327.3-201ENST00000610385 572 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC004477.3-201ENST00000614061 590 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC106858.1-201ENST00000637497 429 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 MIR193BHG-214ENST00000641765 509 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 AC114786.1-201ENST00000512892 1415 ntBASIC4.68□□□□□ -1.66
NKX3-1Q99801 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
NKX3-1Q99801 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
NKX3-1Q99801 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.68□□□□□ -1.66
NKX3-1Q99801 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
NKX3-1Q99801 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
NKX3-1Q99801 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
NKX3-1Q99801 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
NKX3-1Q99801 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
NKX3-1Q99801 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 RNA5SP242-201ENST00000364171 118 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 OR1L6-202ENST00000373684 1044 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 SNORD65-201ENST00000391079 73 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 RPL10P10-201ENST00000403509 664 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 RANP4-201ENST00000413361 655 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 MTCYBP7-201ENST00000419540 1134 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
NKX3-1Q99801 DSTNP5-201ENST00000427921 523 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AL022331.1-201ENST00000429025 477 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 OR6D1P-201ENST00000436165 939 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC092106.1-201ENST00000444291 373 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AL627224.1-201ENST00000448334 444 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 OR52E3P-201ENST00000452083 936 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 RN7SL717P-201ENST00000478343 297 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 RPS3AP15-201ENST00000483874 781 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC093663.2-201ENST00000484625 313 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC010468.3-201ENST00000508225 458 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 IMPA1P1-201ENST00000510718 842 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 MINCR-206ENST00000524335 499 ntTSL 2 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC079148.1-201ENST00000565944 819 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 MRPS21P7-201ENST00000566937 238 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 MIR4660-201ENST00000583549 74 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC005242.1-201ENST00000585658 438 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 ZNF92P2-201ENST00000600543 1059 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 BMS1P7-201ENST00000602440 1052 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 KATNBL1P5-201ENST00000605015 517 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC135178.6-201ENST00000605314 398 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC244107.2-201ENST00000611773 76 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 OR8G7P-201ENST00000616658 848 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 uc_338.7-201ENST00000621834 124 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC015660.5-201ENST00000623238 564 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 AL049767.1-202ENST00000637826 242 ntBASIC4.67□□□□□ -1.66
NKX3-1Q99801 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
NKX3-1Q99801 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
NKX3-1Q99801 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
NKX3-1Q99801 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.67□□□□□ -1.66
NKX3-1Q99801 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms