Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 OR1L6-202ENST00000373684 1044 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 MIR1182-201ENST00000408363 97 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 EI24P4-201ENST00000423683 1078 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 GAPDHP58-201ENST00000438477 1006 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 RPS29P10-201ENST00000439197 166 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 TCEA1P3-201ENST00000443005 880 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 AP000942.1-201ENST00000463969 747 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 RN7SL189P-201ENST00000468631 289 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 RPS4XP14-201ENST00000493072 781 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 SNRPCP2-201ENST00000504370 475 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 AC098976.1-201ENST00000513014 541 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 IGLV2-28-201ENST00000520681 304 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 AC022832.1-201ENST00000530718 645 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 AP001804.2-201ENST00000533932 910 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 AC233702.9-201ENST00000581528 203 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 AP001542.1-201ENST00000591314 200 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 AL022322.2-201ENST00000624072 20397 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS35Q96QK1 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 AC083843.3-201ENST00000623679 2186 ntBASIC5.18□□□□□ -1.58
VPS35Q96QK1 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS35Q96QK1 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 RNU4-44P-201ENST00000363050 141 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 AL353625.1-202ENST00000366273 571 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 MIR1178-201ENST00000408396 91 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 CTSL3P-202ENST00000412179 788 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC005033.1-201ENST00000428904 813 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 ARAFP2-201ENST00000440565 559 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 OR7L1P-201ENST00000456181 380 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC026348.1-201ENST00000462549 1053 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 SEPT7P6-201ENST00000469999 1143 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC074386.1-201ENST00000476560 767 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 NPM1P29-201ENST00000483112 803 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 HAUS8P1-201ENST00000549005 542 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.17□□□□□ -1.58
VPS35Q96QK1 OR7E18P-201ENST00000592589 702 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 AP002884.5-201ENST00000595053 1132 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 OR7M1P-201ENST00000608946 533 ntBASIC5.17□□□□□ -1.58
VPS35Q96QK1 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS35Q96QK1 AC118658.2-201ENST00000618697 459 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms