Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 THAP12P8-201ENST00000447914 2115 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 CUL4AP1-201ENST00000514750 1863 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
SKA3Q8IX90 HSPA8P18-201ENST00000439846 1928 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 AC007342.9-201ENST00000623877 1385 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SKA3Q8IX90 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SKA3Q8IX90 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
SKA3Q8IX90 MAPK10-286ENST00000641208 8747 ntBASIC4.64□□□□□ -1.67
SKA3Q8IX90 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
SKA3Q8IX90 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SKA3Q8IX90 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 CA1-225ENST00000626824 2405 ntTSL 5 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SKA3Q8IX90 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
SKA3Q8IX90 RNA5SP183-201ENST00000362452 119 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 SNORA67-201ENST00000384423 137 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC240504.1-201ENST00000395709 845 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 COX5BP7-201ENST00000414780 274 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 RPL12P43-201ENST00000420608 499 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 RFESDP1-201ENST00000422350 461 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC090018.1-201ENST00000434369 367 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 NOP56P2-201ENST00000447491 769 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC245028.2-201ENST00000458673 253 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 AL591473.1-201ENST00000464297 313 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 OR2AO1P-201ENST00000476497 403 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 RPL21P6-201ENST00000479171 504 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 RPL7P6-201ENST00000480903 738 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 RPL7P41-201ENST00000485823 957 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 UBA52P7-201ENST00000486088 380 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 RPL15P21-201ENST00000495592 567 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 RPS24P16-201ENST00000497294 392 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 IMPA1P1-201ENST00000510718 842 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SKA3Q8IX90 AL049779.2-201ENST00000553847 315 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 EIF1AXP2-201ENST00000555940 413 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC011270.1-201ENST00000558606 583 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SKA3Q8IX90 RN7SL290P-201ENST00000578661 300 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 MIR3176-201ENST00000582210 90 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC009597.2-201ENST00000604659 592 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 AC022467.1-201ENST00000614738 749 ntBASIC4.63□□□□□ -1.67
SKA3Q8IX90 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.63□□□□□ -1.67
SKA3Q8IX90 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SKA3Q8IX90 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 MTCO1P11-201ENST00000429111 1528 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 MTCO1P15-201ENST00000529569 1526 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SKA3Q8IX90 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SKA3Q8IX90 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SKA3Q8IX90 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 RN7SKP153-201ENST00000365026 316 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 AC092642.1-201ENST00000392417 425 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 VDAC2P1-201ENST00000399358 958 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 AC234781.4-201ENST00000419384 244 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 AC093655.2-201ENST00000425735 631 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 HMGB1P32-201ENST00000425971 565 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 UBE2V2P3-201ENST00000433562 437 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 AL591623.2-201ENST00000449978 222 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 DNAJB5P1-201ENST00000454004 806 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 RNU6-775P-201ENST00000459318 96 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 AC024558.1-201ENST00000505008 528 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 AC138938.1-201ENST00000515431 782 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC4.62□□□□□ -1.67
SKA3Q8IX90 AC007225.2-201ENST00000562529 256 ntBASIC4.62□□□□□ -1.67
SKA3Q8IX90 MIR4489-201ENST00000578869 62 ntBASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms