Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.81□□□□□ -1.64
LIM2P55344 RNU6-84P-201ENST00000607737 102 ntBASIC4.81□□□□□ -1.64
LIM2P55344 AC107905.1-201ENST00000616204 426 ntBASIC4.81□□□□□ -1.64
LIM2P55344 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC4.81□□□□□ -1.64
LIM2P55344 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.81□□□□□ -1.64
LIM2P55344 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.81□□□□□ -1.64
LIM2P55344 LINC01739-205ENST00000641890 573 ntBASIC4.81□□□□□ -1.64
LIM2P55344 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIM2P55344 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.81□□□□□ -1.64
LIM2P55344 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIM2P55344 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIM2P55344 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.81□□□□□ -1.64
LIM2P55344 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.81□□□□□ -1.64
LIM2P55344 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIM2P55344 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIM2P55344 NXF4-202ENST00000416098 1465 ntBASIC4.81□□□□□ -1.64
LIM2P55344 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIM2P55344 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIM2P55344 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.8□□□□□ -1.64
LIM2P55344 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.8□□□□□ -1.64
LIM2P55344 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.8□□□□□ -1.64
LIM2P55344 TCP11X1-202ENST00000622971 1372 ntBASIC4.8□□□□□ -1.64
LIM2P55344 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIM2P55344 THAP12P4-201ENST00000528321 2266 ntBASIC4.8□□□□□ -1.64
LIM2P55344 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.8□□□□□ -1.64
LIM2P55344 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LIM2P55344 MIR765-201ENST00000390226 114 ntBASIC4.8□□□□□ -1.64
LIM2P55344 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.8□□□□□ -1.64
LIM2P55344 U3.32-201ENST00000408116 212 ntBASIC4.8□□□□□ -1.64
LIM2P55344 CTSL3P-202ENST00000412179 788 ntBASIC4.8□□□□□ -1.64
LIM2P55344 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC4.8□□□□□ -1.64
LIM2P55344 AC096644.3-201ENST00000416788 338 ntBASIC4.8□□□□□ -1.64
LIM2P55344 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LIM2P55344 BX323845.1-201ENST00000432417 179 ntBASIC4.8□□□□□ -1.64
LIM2P55344 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LIM2P55344 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.8□□□□□ -1.64
LIM2P55344 AC004980.3-201ENST00000447046 365 ntBASIC4.8□□□□□ -1.64
LIM2P55344 AC004815.1-201ENST00000484185 331 ntBASIC4.8□□□□□ -1.64
LIM2P55344 HMGN2P25-201ENST00000486956 268 ntBASIC4.8□□□□□ -1.64
LIM2P55344 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.8□□□□□ -1.64
LIM2P55344 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC4.8□□□□□ -1.64
LIM2P55344 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LIM2P55344 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.8□□□□□ -1.64
LIM2P55344 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.8□□□□□ -1.64
LIM2P55344 SDR42E1P1-201ENST00000611327 477 ntBASIC4.8□□□□□ -1.64
LIM2P55344 AC009163.6-201ENST00000612367 342 ntBASIC4.8□□□□□ -1.64
LIM2P55344 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.8□□□□□ -1.64
LIM2P55344 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.8□□□□□ -1.64
LIM2P55344 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIM2P55344 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIM2P55344 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
LIM2P55344 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LIM2P55344 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIM2P55344 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.8□□□□□ -1.64
LIM2P55344 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LIM2P55344 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIM2P55344 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIM2P55344 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
LIM2P55344 NCOA4P2-201ENST00000340589 1813 ntBASIC4.79□□□□□ -1.64
LIM2P55344 AC109780.1-201ENST00000451768 1344 ntBASIC4.79□□□□□ -1.64
LIM2P55344 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
LIM2P55344 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIM2P55344 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.79□□□□□ -1.64
LIM2P55344 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIM2P55344 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIM2P55344 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIM2P55344 MTHFD2P5-201ENST00000320415 844 ntBASIC4.79□□□□□ -1.64
LIM2P55344 RN7SKP186-201ENST00000365371 303 ntBASIC4.79□□□□□ -1.64
LIM2P55344 DPPA2P3-201ENST00000411853 655 ntBASIC4.79□□□□□ -1.64
LIM2P55344 Z68694.1-201ENST00000413929 841 ntBASIC4.79□□□□□ -1.64
LIM2P55344 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.79□□□□□ -1.64
LIM2P55344 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.79□□□□□ -1.64
LIM2P55344 AC012512.1-201ENST00000446594 718 ntBASIC4.79□□□□□ -1.64
LIM2P55344 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.79□□□□□ -1.64
LIM2P55344 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
LIM2P55344 AC026348.1-201ENST00000462549 1053 ntBASIC4.79□□□□□ -1.64
LIM2P55344 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC4.79□□□□□ -1.64
LIM2P55344 AC016687.1-201ENST00000482574 353 ntBASIC4.79□□□□□ -1.64
LIM2P55344 RN7SL441P-201ENST00000492388 296 ntBASIC4.79□□□□□ -1.64
LIM2P55344 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.79□□□□□ -1.64
LIM2P55344 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.79□□□□□ -1.64
LIM2P55344 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.79□□□□□ -1.64
LIM2P55344 AC010350.1-201ENST00000504908 231 ntBASIC4.79□□□□□ -1.64
LIM2P55344 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.79□□□□□ -1.64
LIM2P55344 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.79□□□□□ -1.64
LIM2P55344 RN7SKP66-201ENST00000516681 231 ntBASIC4.79□□□□□ -1.64
LIM2P55344 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.79□□□□□ -1.64
LIM2P55344 MTND2P17-201ENST00000550281 688 ntBASIC4.79□□□□□ -1.64
LIM2P55344 HMGN2P47-201ENST00000559378 272 ntBASIC4.79□□□□□ -1.64
LIM2P55344 NDUFB4P11-201ENST00000560510 395 ntBASIC4.79□□□□□ -1.64
LIM2P55344 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIM2P55344 AC009852.2-201ENST00000567898 485 ntBASIC4.79□□□□□ -1.64
LIM2P55344 MTATP6P25-201ENST00000574491 261 ntBASIC4.79□□□□□ -1.64
LIM2P55344 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC4.79□□□□□ -1.64
LIM2P55344 BX005214.3-202ENST00000619809 325 ntBASIC4.79□□□□□ -1.64
LIM2P55344 AP000648.2-201ENST00000624182 404 ntBASIC4.79□□□□□ -1.64
LIM2P55344 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIM2P55344 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.79□□□□□ -1.64
LIM2P55344 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC4.79□□□□□ -1.64
LIM2P55344 MUC2-202ENST00000613187 4845 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 128.2 ms