Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC4.81□□□□□ -1.64
SDC1P18827 AL353625.1-202ENST00000366273 571 ntBASIC4.81□□□□□ -1.64
SDC1P18827 MIR143-201ENST00000385300 106 ntBASIC4.81□□□□□ -1.64
SDC1P18827 LRRC37BP1-201ENST00000398851 714 ntBASIC4.81□□□□□ -1.64
SDC1P18827 OR3A2-201ENST00000408891 1076 ntBASIC4.81□□□□□ -1.64
SDC1P18827 RN7SKP114-201ENST00000410327 279 ntBASIC4.81□□□□□ -1.64
SDC1P18827 RPS20P25-201ENST00000412447 352 ntBASIC4.81□□□□□ -1.64
SDC1P18827 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.81□□□□□ -1.64
SDC1P18827 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.81□□□□□ -1.64
SDC1P18827 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC4.81□□□□□ -1.64
SDC1P18827 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.81□□□□□ -1.64
SDC1P18827 AC002069.1-201ENST00000429649 1159 ntBASIC4.81□□□□□ -1.64
SDC1P18827 CFL1P1-202ENST00000432948 411 ntBASIC4.81□□□□□ -1.64
SDC1P18827 RPS29P9-201ENST00000440360 171 ntBASIC4.81□□□□□ -1.64
SDC1P18827 AL450023.3-201ENST00000440592 271 ntBASIC4.81□□□□□ -1.64
SDC1P18827 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC4.81□□□□□ -1.64
SDC1P18827 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC4.81□□□□□ -1.64
SDC1P18827 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC4.81□□□□□ -1.64
SDC1P18827 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC4.81□□□□□ -1.64
SDC1P18827 AL356390.1-201ENST00000455684 397 ntBASIC4.81□□□□□ -1.64
SDC1P18827 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC4.81□□□□□ -1.64
SDC1P18827 RPS17P2-201ENST00000461663 408 ntBASIC4.81□□□□□ -1.64
SDC1P18827 RPS4XP1-201ENST00000482189 787 ntBASIC4.81□□□□□ -1.64
SDC1P18827 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.81□□□□□ -1.64
SDC1P18827 RFPL4AP3-201ENST00000515267 345 ntBASIC4.81□□□□□ -1.64
SDC1P18827 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SDC1P18827 SMARCE1P3-201ENST00000553649 1231 ntBASIC4.81□□□□□ -1.64
SDC1P18827 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC4.81□□□□□ -1.64
SDC1P18827 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC4.81□□□□□ -1.64
SDC1P18827 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.81□□□□□ -1.64
SDC1P18827 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.81□□□□□ -1.64
SDC1P18827 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.81□□□□□ -1.64
SDC1P18827 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC4.81□□□□□ -1.64
SDC1P18827 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SDC1P18827 AC073869.7-201ENST00000640874 297 ntBASIC4.81□□□□□ -1.64
SDC1P18827 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SDC1P18827 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.81□□□□□ -1.64
SDC1P18827 AC068446.1-201ENST00000556425 1549 ntBASIC4.81□□□□□ -1.64
SDC1P18827 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SDC1P18827 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.81□□□□□ -1.64
SDC1P18827 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SDC1P18827 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.8□□□□□ -1.64
SDC1P18827 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SDC1P18827 AC025574.1-201ENST00000554784 1653 ntBASIC4.8□□□□□ -1.64
SDC1P18827 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
SDC1P18827 NAMPTP1-201ENST00000440465 2514 ntBASIC4.8□□□□□ -1.64
SDC1P18827 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SDC1P18827 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
SDC1P18827 AC019072.1-201ENST00000604535 1551 ntBASIC4.8□□□□□ -1.64
SDC1P18827 MIR323A-201ENST00000362199 86 ntBASIC4.8□□□□□ -1.64
SDC1P18827 RN7SKP74-201ENST00000362849 309 ntBASIC4.8□□□□□ -1.64
SDC1P18827 SNORA17.1-201ENST00000362945 126 ntBASIC4.8□□□□□ -1.64
SDC1P18827 RNU1-43P-201ENST00000365052 165 ntBASIC4.8□□□□□ -1.64
SDC1P18827 DUTP5-201ENST00000406790 469 ntBASIC4.8□□□□□ -1.64
SDC1P18827 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC4.8□□□□□ -1.64
SDC1P18827 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.8□□□□□ -1.64
SDC1P18827 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC4.8□□□□□ -1.64
SDC1P18827 AL121776.1-201ENST00000429337 372 ntBASIC4.8□□□□□ -1.64
SDC1P18827 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.8□□□□□ -1.64
SDC1P18827 HMGB1P4-201ENST00000455362 567 ntBASIC4.8□□□□□ -1.64
SDC1P18827 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC4.8□□□□□ -1.64
SDC1P18827 ENPP7P9-201ENST00000514456 627 ntBASIC4.8□□□□□ -1.64
SDC1P18827 BX510359.5-201ENST00000515651 304 ntBASIC4.8□□□□□ -1.64
SDC1P18827 AC012339.2-201ENST00000523996 453 ntBASIC4.8□□□□□ -1.64
SDC1P18827 AC005868.1-201ENST00000536421 331 ntBASIC4.8□□□□□ -1.64
SDC1P18827 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.8□□□□□ -1.64
SDC1P18827 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.8□□□□□ -1.64
SDC1P18827 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.8□□□□□ -1.64
SDC1P18827 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SDC1P18827 IMMP1LP3-201ENST00000604197 224 ntBASIC4.8□□□□□ -1.64
SDC1P18827 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.8□□□□□ -1.64
SDC1P18827 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SDC1P18827 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.8□□□□□ -1.64
SDC1P18827 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.8□□□□□ -1.64
SDC1P18827 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SDC1P18827 AC007996.1-201ENST00000620414 2821 ntBASIC4.8□□□□□ -1.64
SDC1P18827 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.8□□□□□ -1.64
SDC1P18827 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SDC1P18827 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SDC1P18827 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SDC1P18827 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.8□□□□□ -1.64
SDC1P18827 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.79□□□□□ -1.64
SDC1P18827 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.79□□□□□ -1.64
SDC1P18827 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
SDC1P18827 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SDC1P18827 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SDC1P18827 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SDC1P18827 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SDC1P18827 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SDC1P18827 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SDC1P18827 RNU4-23P-201ENST00000362839 140 ntBASIC4.79□□□□□ -1.64
SDC1P18827 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SDC1P18827 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SDC1P18827 U3.25-201ENST00000391209 220 ntBASIC4.79□□□□□ -1.64
SDC1P18827 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.79□□□□□ -1.64
SDC1P18827 RN7SKP126-201ENST00000411143 300 ntBASIC4.79□□□□□ -1.64
SDC1P18827 RCC2P2-201ENST00000422174 918 ntBASIC4.79□□□□□ -1.64
SDC1P18827 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.79□□□□□ -1.64
SDC1P18827 OR2AH1P-201ENST00000425717 928 ntBASIC4.79□□□□□ -1.64
SDC1P18827 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms