Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC140Q96MF4 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 KLHL2-202ENST00000421009 2452 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC107081.3-201ENST00000612715 2034 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 MKL2-209ENST00000574045 3309 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 Y_RNA.453-201ENST00000384223 109 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 RNU6-441P-201ENST00000384545 106 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 RNU6-952P-201ENST00000391164 108 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC087752.1-201ENST00000391360 558 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 DSTNP4-201ENST00000399472 474 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 PEX12P1-201ENST00000400284 1048 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 CCNG1P1-201ENST00000406783 885 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC023469.1-201ENST00000409243 469 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 RPL17P17-201ENST00000419491 557 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 HCG25-217ENST00000422366 702 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 UQCRHP1-204ENST00000424609 274 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AL358934.1-201ENST00000432346 324 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 LINC01732-201ENST00000435023 542 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AL451074.3-201ENST00000437709 472 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AL512326.1-201ENST00000443050 721 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC005297.1-201ENST00000444765 862 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 DEFA11P-201ENST00000446470 261 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 GAPDHP17-201ENST00000449858 1001 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AL138787.2-201ENST00000466576 367 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 RPS15AP17-201ENST00000470598 390 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AP002884.1-201ENST00000479691 655 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC079594.1-201ENST00000489757 331 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 RN7SL306P-201ENST00000492941 296 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC112225.1-201ENST00000508230 297 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC034159.1-201ENST00000513885 583 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC010342.1-201ENST00000514047 877 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 MTCO2P4-201ENST00000517968 247 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC013546.1-201ENST00000523232 564 ntTSL 4 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 RPL21P5-201ENST00000554662 472 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 SCIMP-204ENST00000574297 569 ntAPPRIS ALT2 TSL 3 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 LARP7P2-201ENST00000575306 125 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 MIR4786-201ENST00000583954 80 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 TPMTP1-201ENST00000592307 737 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 NPLOC4-221ENST00000625705 405 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 U6.101-201ENST00000637707 76 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AC132219.2-201ENST00000624416 2327 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AL671511.1-201ENST00000425033 3458 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AL365204.1-201ENST00000423440 1430 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AL022578.1-201ENST00000439330 1433 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 PWRN1-212ENST00000569908 1435 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC140Q96MF4 DYNC1I2P1-201ENST00000435916 1838 ntBASIC5.55□□□□□ -1.52
CCDC140Q96MF4 AL606537.1-201ENST00000607258 2011 ntBASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms