Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.63□□□□□ -1.67
CDX1P47902 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CDX1P47902 AL109741.3-201ENST00000561748 592 ntBASIC4.63□□□□□ -1.67
CDX1P47902 AGGF1P7-201ENST00000562369 913 ntBASIC4.63□□□□□ -1.67
CDX1P47902 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC4.63□□□□□ -1.67
CDX1P47902 AC092121.1-201ENST00000569452 202 ntBASIC4.63□□□□□ -1.67
CDX1P47902 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC4.63□□□□□ -1.67
CDX1P47902 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC4.63□□□□□ -1.67
CDX1P47902 AC124856.1-201ENST00000600819 896 ntBASIC4.63□□□□□ -1.67
CDX1P47902 AC098483.2-201ENST00000603158 454 ntBASIC4.63□□□□□ -1.67
CDX1P47902 AC100767.2-201ENST00000604840 693 ntBASIC4.63□□□□□ -1.67
CDX1P47902 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC4.63□□□□□ -1.67
CDX1P47902 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.63□□□□□ -1.67
CDX1P47902 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.63□□□□□ -1.67
CDX1P47902 uc_338.9-201ENST00000617424 182 ntBASIC4.63□□□□□ -1.67
CDX1P47902 SNX18P12-201ENST00000624821 759 ntBASIC4.63□□□□□ -1.67
CDX1P47902 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC4.63□□□□□ -1.67
CDX1P47902 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC4.63□□□□□ -1.67
CDX1P47902 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.63□□□□□ -1.67
CDX1P47902 AL731566.1-201ENST00000620490 1937 ntBASIC4.63□□□□□ -1.67
CDX1P47902 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CDX1P47902 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.63□□□□□ -1.67
CDX1P47902 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
CDX1P47902 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CDX1P47902 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
CDX1P47902 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC4.63□□□□□ -1.67
CDX1P47902 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CDX1P47902 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.63□□□□□ -1.67
CDX1P47902 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
CDX1P47902 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.62□□□□□ -1.67
CDX1P47902 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
CDX1P47902 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
CDX1P47902 THAP12P9-201ENST00000503971 2360 ntBASIC4.62□□□□□ -1.67
CDX1P47902 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
CDX1P47902 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
CDX1P47902 OR9K1P-201ENST00000326513 941 ntBASIC4.62□□□□□ -1.67
CDX1P47902 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC4.62□□□□□ -1.67
CDX1P47902 RNU6-792P-201ENST00000363490 107 ntBASIC4.62□□□□□ -1.67
CDX1P47902 RNA5SP510-201ENST00000364697 99 ntBASIC4.62□□□□□ -1.67
CDX1P47902 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
CDX1P47902 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC4.62□□□□□ -1.67
CDX1P47902 MTCO3P4-201ENST00000419236 787 ntBASIC4.62□□□□□ -1.67
CDX1P47902 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 AC099677.3-201ENST00000427081 395 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AL445928.1-201ENST00000435545 222 ntBASIC4.62□□□□□ -1.67
CDX1P47902 RPL23AP19-201ENST00000436229 369 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC4.62□□□□□ -1.67
CDX1P47902 RNFT1P2-201ENST00000443064 757 ntBASIC4.62□□□□□ -1.67
CDX1P47902 RPS27P5-201ENST00000444247 244 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC4.62□□□□□ -1.67
CDX1P47902 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC4.62□□□□□ -1.67
CDX1P47902 AL591363.1-201ENST00000450091 483 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AP006222.1-205ENST00000450734 457 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AL358876.1-201ENST00000453364 1075 ntBASIC4.62□□□□□ -1.67
CDX1P47902 HMGB1P4-201ENST00000455362 567 ntBASIC4.62□□□□□ -1.67
CDX1P47902 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC4.62□□□□□ -1.67
CDX1P47902 AP000942.1-201ENST00000463969 747 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AL049829.1-201ENST00000465411 156 ntBASIC4.62□□□□□ -1.67
CDX1P47902 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 AC124945.1-201ENST00000485133 188 ntBASIC4.62□□□□□ -1.67
CDX1P47902 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC4.62□□□□□ -1.67
CDX1P47902 RPS27AP16-201ENST00000492222 470 ntBASIC4.62□□□□□ -1.67
CDX1P47902 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC4.62□□□□□ -1.67
CDX1P47902 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC4.62□□□□□ -1.67
CDX1P47902 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.62□□□□□ -1.67
CDX1P47902 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.62□□□□□ -1.67
CDX1P47902 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC4.62□□□□□ -1.67
CDX1P47902 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.62□□□□□ -1.67
CDX1P47902 AC126615.2-201ENST00000553003 515 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AC091078.2-201ENST00000557145 559 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AL356801.1-201ENST00000559320 294 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC4.62□□□□□ -1.67
CDX1P47902 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC4.62□□□□□ -1.67
CDX1P47902 MIR3908-201ENST00000579798 126 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AC127024.5-201ENST00000580085 462 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC4.62□□□□□ -1.67
CDX1P47902 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC4.62□□□□□ -1.67
CDX1P47902 AC005776.1-201ENST00000603164 290 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AC079880.2-201ENST00000603790 1213 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AC145423.1-201ENST00000605712 336 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.62□□□□□ -1.67
CDX1P47902 AC106730.3-201ENST00000624568 641 ntBASIC4.62□□□□□ -1.67
CDX1P47902 AC080188.3-201ENST00000624842 748 ntBASIC4.62□□□□□ -1.67
CDX1P47902 5S_rRNA.28-201ENST00000638107 119 ntBASIC4.62□□□□□ -1.67
CDX1P47902 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
CDX1P47902 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
CDX1P47902 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 PDZK1P1-202ENST00000425209 1350 ntBASIC4.62□□□□□ -1.67
CDX1P47902 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms