Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC5.28□□□□□ -1.56
MSH3P20585 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.28□□□□□ -1.56
MSH3P20585 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.28□□□□□ -1.56
MSH3P20585 AL049874.2-201ENST00000492636 288 ntBASIC5.28□□□□□ -1.56
MSH3P20585 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5.28□□□□□ -1.56
MSH3P20585 AC016559.2-201ENST00000510759 359 ntBASIC5.28□□□□□ -1.56
MSH3P20585 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC5.28□□□□□ -1.56
MSH3P20585 AC022360.1-201ENST00000521058 340 ntBASIC5.28□□□□□ -1.56
MSH3P20585 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
MSH3P20585 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.28□□□□□ -1.56
MSH3P20585 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.28□□□□□ -1.56
MSH3P20585 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
MSH3P20585 RPL10P14-201ENST00000565265 298 ntBASIC5.28□□□□□ -1.56
MSH3P20585 AC106730.2-201ENST00000566641 540 ntBASIC5.28□□□□□ -1.56
MSH3P20585 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.28□□□□□ -1.56
MSH3P20585 RN7SL753P-201ENST00000581238 290 ntBASIC5.28□□□□□ -1.56
MSH3P20585 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC5.28□□□□□ -1.56
MSH3P20585 AC109309.2-201ENST00000612597 332 ntBASIC5.28□□□□□ -1.56
MSH3P20585 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.28□□□□□ -1.56
MSH3P20585 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
MSH3P20585 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
MSH3P20585 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
MSH3P20585 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
MSH3P20585 AC093909.5-201ENST00000621839 1799 ntBASIC5.28□□□□□ -1.56
MSH3P20585 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.28□□□□□ -1.56
MSH3P20585 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
MSH3P20585 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
MSH3P20585 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
MSH3P20585 CR382285.2-201ENST00000624662 1495 ntBASIC5.27□□□□□ -1.57
MSH3P20585 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSH3P20585 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
MSH3P20585 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSH3P20585 MTHFD2P5-201ENST00000320415 844 ntBASIC5.27□□□□□ -1.57
MSH3P20585 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
MSH3P20585 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSH3P20585 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSH3P20585 AP000534.2-201ENST00000412729 568 ntBASIC5.27□□□□□ -1.57
MSH3P20585 AL356968.2-201ENST00000412769 1257 ntBASIC5.27□□□□□ -1.57
MSH3P20585 RPL19P16-201ENST00000433839 588 ntBASIC5.27□□□□□ -1.57
MSH3P20585 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.27□□□□□ -1.57
MSH3P20585 AC090018.1-201ENST00000434369 367 ntBASIC5.27□□□□□ -1.57
MSH3P20585 AL590762.3-201ENST00000436372 640 ntBASIC5.27□□□□□ -1.57
MSH3P20585 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.27□□□□□ -1.57
MSH3P20585 RPS26P41-201ENST00000450370 284 ntBASIC5.27□□□□□ -1.57
MSH3P20585 OR52E3P-201ENST00000452083 936 ntBASIC5.27□□□□□ -1.57
MSH3P20585 AC018638.3-201ENST00000461273 132 ntBASIC5.27□□□□□ -1.57
MSH3P20585 RPS4XP1-201ENST00000482189 787 ntBASIC5.27□□□□□ -1.57
MSH3P20585 AC058823.1-201ENST00000485315 474 ntBASIC5.27□□□□□ -1.57
MSH3P20585 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.27□□□□□ -1.57
MSH3P20585 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.27□□□□□ -1.57
MSH3P20585 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.27□□□□□ -1.57
MSH3P20585 RNU6-941P-201ENST00000516346 108 ntBASIC5.27□□□□□ -1.57
MSH3P20585 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC5.27□□□□□ -1.57
MSH3P20585 OR10D4P-201ENST00000525892 951 ntBASIC5.27□□□□□ -1.57
MSH3P20585 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.27□□□□□ -1.57
MSH3P20585 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSH3P20585 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSH3P20585 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.27□□□□□ -1.57
MSH3P20585 MTND4LP25-201ENST00000570218 163 ntBASIC5.27□□□□□ -1.57
MSH3P20585 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.27□□□□□ -1.57
MSH3P20585 MIR3176-201ENST00000582210 90 ntBASIC5.27□□□□□ -1.57
MSH3P20585 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.27□□□□□ -1.57
MSH3P20585 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC5.27□□□□□ -1.57
MSH3P20585 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.27□□□□□ -1.57
MSH3P20585 IMMP1LP3-201ENST00000604197 224 ntBASIC5.27□□□□□ -1.57
MSH3P20585 AC144521.1-201ENST00000607148 956 ntBASIC5.27□□□□□ -1.57
MSH3P20585 MIR6826-201ENST00000617808 98 ntBASIC5.27□□□□□ -1.57
MSH3P20585 AL590410.1-201ENST00000617925 333 ntBASIC5.27□□□□□ -1.57
MSH3P20585 AC026367.3-201ENST00000619032 590 ntBASIC5.27□□□□□ -1.57
MSH3P20585 AC008115.4-201ENST00000619780 775 ntBASIC5.27□□□□□ -1.57
MSH3P20585 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.27□□□□□ -1.57
MSH3P20585 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSH3P20585 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.27□□□□□ -1.57
MSH3P20585 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSH3P20585 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSH3P20585 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
MSH3P20585 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.26□□□□□ -1.57
MSH3P20585 AC093591.2-201ENST00000565254 3843 ntBASIC5.26□□□□□ -1.57
MSH3P20585 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.26□□□□□ -1.57
MSH3P20585 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.26□□□□□ -1.57
MSH3P20585 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSH3P20585 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.26□□□□□ -1.57
MSH3P20585 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
MSH3P20585 OR55B1P-203ENST00000641518 2602 ntBASIC5.26□□□□□ -1.57
MSH3P20585 AC026523.2-201ENST00000625039 7739 ntBASIC5.26□□□□□ -1.57
MSH3P20585 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSH3P20585 AC005294.1-201ENST00000355509 281 ntBASIC5.26□□□□□ -1.57
MSH3P20585 RN7SKP153-201ENST00000365026 316 ntBASIC5.26□□□□□ -1.57
MSH3P20585 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC5.26□□□□□ -1.57
MSH3P20585 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
MSH3P20585 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC5.26□□□□□ -1.57
MSH3P20585 OR1L6-202ENST00000373684 1044 ntBASIC5.26□□□□□ -1.57
MSH3P20585 MIR323B-201ENST00000385269 82 ntBASIC5.26□□□□□ -1.57
MSH3P20585 MIR1286-201ENST00000408112 78 ntBASIC5.26□□□□□ -1.57
MSH3P20585 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.26□□□□□ -1.57
MSH3P20585 RN7SKP229-201ENST00000410465 302 ntBASIC5.26□□□□□ -1.57
MSH3P20585 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.26□□□□□ -1.57
MSH3P20585 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.26□□□□□ -1.57
MSH3P20585 AL121878.1-201ENST00000418638 859 ntBASIC5.26□□□□□ -1.57
MSH3P20585 SLC35E1P1-201ENST00000419313 864 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms