Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.83□□□□□ -1.64
SDC1P18827 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.83□□□□□ -1.64
SDC1P18827 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SDC1P18827 TCP1P3-201ENST00000414406 1498 ntBASIC4.83□□□□□ -1.64
SDC1P18827 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.83□□□□□ -1.64
SDC1P18827 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SDC1P18827 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.83□□□□□ -1.64
SDC1P18827 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SDC1P18827 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
SDC1P18827 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC4.83□□□□□ -1.64
SDC1P18827 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC4.83□□□□□ -1.64
SDC1P18827 AC098592.2-201ENST00000413158 265 ntBASIC4.83□□□□□ -1.64
SDC1P18827 VN1R31P-201ENST00000417498 730 ntBASIC4.83□□□□□ -1.64
SDC1P18827 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.83□□□□□ -1.64
SDC1P18827 AC244453.4-201ENST00000419150 388 ntBASIC4.83□□□□□ -1.64
SDC1P18827 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
SDC1P18827 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.83□□□□□ -1.64
SDC1P18827 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.83□□□□□ -1.64
SDC1P18827 TXNP5-201ENST00000441043 315 ntBASIC4.83□□□□□ -1.64
SDC1P18827 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.83□□□□□ -1.64
SDC1P18827 SPRYD7P1-201ENST00000443861 570 ntBASIC4.83□□□□□ -1.64
SDC1P18827 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.83□□□□□ -1.64
SDC1P18827 PGAM1P13-201ENST00000507497 754 ntBASIC4.83□□□□□ -1.64
SDC1P18827 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC4.83□□□□□ -1.64
SDC1P18827 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC4.83□□□□□ -1.64
SDC1P18827 RNU6-513P-201ENST00000516104 104 ntBASIC4.83□□□□□ -1.64
SDC1P18827 OR4A46P-201ENST00000527255 933 ntBASIC4.83□□□□□ -1.64
SDC1P18827 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.83□□□□□ -1.64
SDC1P18827 AC068993.1-201ENST00000546724 589 ntBASIC4.83□□□□□ -1.64
SDC1P18827 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.83□□□□□ -1.64
SDC1P18827 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC4.83□□□□□ -1.64
SDC1P18827 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC4.83□□□□□ -1.64
SDC1P18827 FKBP1AP1-201ENST00000594588 318 ntBASIC4.83□□□□□ -1.64
SDC1P18827 AC006272.2-201ENST00000594725 163 ntBASIC4.83□□□□□ -1.64
SDC1P18827 GMCL1P2-201ENST00000605230 823 ntBASIC4.83□□□□□ -1.64
SDC1P18827 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.83□□□□□ -1.64
SDC1P18827 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.83□□□□□ -1.64
SDC1P18827 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.83□□□□□ -1.64
SDC1P18827 AC026124.2-201ENST00000621847 656 ntBASIC4.83□□□□□ -1.64
SDC1P18827 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SDC1P18827 AL022393.1-201ENST00000625142 1677 ntBASIC4.83□□□□□ -1.64
SDC1P18827 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SDC1P18827 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
SDC1P18827 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SDC1P18827 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
SDC1P18827 DDX18P6-201ENST00000450119 1997 ntBASIC4.82□□□□□ -1.64
SDC1P18827 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SDC1P18827 Z95331.1-201ENST00000623075 23112 ntBASIC4.82□□□□□ -1.64
SDC1P18827 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.82□□□□□ -1.64
SDC1P18827 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SDC1P18827 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SDC1P18827 SNORA77-201ENST00000408716 125 ntBASIC4.82□□□□□ -1.64
SDC1P18827 HSPE1P16-201ENST00000426640 348 ntBASIC4.82□□□□□ -1.64
SDC1P18827 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.82□□□□□ -1.64
SDC1P18827 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.82□□□□□ -1.64
SDC1P18827 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC4.82□□□□□ -1.64
SDC1P18827 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC4.82□□□□□ -1.64
SDC1P18827 AL691482.1-201ENST00000453255 87 ntBASIC4.82□□□□□ -1.64
SDC1P18827 AC093166.2-201ENST00000455969 1017 ntBASIC4.82□□□□□ -1.64
SDC1P18827 SETP20-201ENST00000457046 852 ntBASIC4.82□□□□□ -1.64
SDC1P18827 AC011225.1-201ENST00000457751 369 ntBASIC4.82□□□□□ -1.64
SDC1P18827 AC009127.1-201ENST00000467090 155 ntBASIC4.82□□□□□ -1.64
SDC1P18827 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.82□□□□□ -1.64
SDC1P18827 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.82□□□□□ -1.64
SDC1P18827 AC069304.1-201ENST00000491593 704 ntBASIC4.82□□□□□ -1.64
SDC1P18827 AL136038.1-201ENST00000497246 351 ntBASIC4.82□□□□□ -1.64
SDC1P18827 OR52A4P-203ENST00000498233 1014 ntBASIC4.82□□□□□ -1.64
SDC1P18827 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SDC1P18827 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
SDC1P18827 RPL23AP53-201ENST00000521854 457 ntBASIC4.82□□□□□ -1.64
SDC1P18827 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC4.82□□□□□ -1.64
SDC1P18827 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.82□□□□□ -1.64
SDC1P18827 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.82□□□□□ -1.64
SDC1P18827 AL049779.2-201ENST00000553847 315 ntBASIC4.82□□□□□ -1.64
SDC1P18827 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
SDC1P18827 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.82□□□□□ -1.64
SDC1P18827 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC4.82□□□□□ -1.64
SDC1P18827 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
SDC1P18827 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC4.82□□□□□ -1.64
SDC1P18827 MIR6837-201ENST00000620884 64 ntBASIC4.82□□□□□ -1.64
SDC1P18827 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC4.82□□□□□ -1.64
SDC1P18827 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.82□□□□□ -1.64
SDC1P18827 METTL15-211ENST00000634762 718 ntTSL 5 BASIC4.82□□□□□ -1.64
SDC1P18827 CASC19-264ENST00000641912 1184 ntBASIC4.82□□□□□ -1.64
SDC1P18827 AC000374.1-201ENST00000434698 1745 ntBASIC4.82□□□□□ -1.64
SDC1P18827 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SDC1P18827 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
SDC1P18827 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SDC1P18827 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SDC1P18827 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.82□□□□□ -1.64
SDC1P18827 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SDC1P18827 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
SDC1P18827 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.81□□□□□ -1.64
SDC1P18827 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.81□□□□□ -1.64
SDC1P18827 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SDC1P18827 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SDC1P18827 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.81□□□□□ -1.64
SDC1P18827 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SDC1P18827 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SDC1P18827 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 185.8 ms