Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RN7SL690P-201ENST00000582087 240 ntBASIC6.65□□□□□ -1.34
HOXC9P31274 MIR4697-201ENST00000582977 78 ntBASIC6.65□□□□□ -1.34
HOXC9P31274 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC6.65□□□□□ -1.34
HOXC9P31274 AL034408.1-201ENST00000637712 664 ntBASIC6.65□□□□□ -1.34
HOXC9P31274 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
HOXC9P31274 AC010928.1-201ENST00000592477 1447 ntBASIC6.65□□□□□ -1.35
HOXC9P31274 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.35
HOXC9P31274 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC6.65□□□□□ -1.35
HOXC9P31274 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.35
HOXC9P31274 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
HOXC9P31274 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
HOXC9P31274 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.35
HOXC9P31274 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
HOXC9P31274 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
HOXC9P31274 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
HOXC9P31274 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.64□□□□□ -1.35
HOXC9P31274 AP001157.1-201ENST00000550837 2339 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
HOXC9P31274 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
HOXC9P31274 OR1L6-202ENST00000373684 1044 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 RNA5SP332-201ENST00000391063 115 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 SNORA48.4-201ENST00000391089 134 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC6.64□□□□□ -1.35
HOXC9P31274 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC6.64□□□□□ -1.35
HOXC9P31274 MED28P3-201ENST00000444288 531 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 SLC25A18P1-201ENST00000449385 454 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 SSR3-206ENST00000476217 807 ntTSL 3 BASIC6.64□□□□□ -1.35
HOXC9P31274 AC090058.1-201ENST00000498788 435 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 AC093720.1-201ENST00000505681 714 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC6.64□□□□□ -1.35
HOXC9P31274 AL512310.9-201ENST00000553311 948 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC6.64□□□□□ -1.35
HOXC9P31274 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
HOXC9P31274 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC6.64□□□□□ -1.35
HOXC9P31274 MTATP6P25-201ENST00000574491 261 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC6.64□□□□□ -1.35
HOXC9P31274 MIR5096-201ENST00000583713 70 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC6.64□□□□□ -1.35
HOXC9P31274 AL162574.1-201ENST00000615702 950 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 AC107308.1-201ENST00000615897 301 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 AL731566.2-201ENST00000618971 317 ntBASIC6.64□□□□□ -1.35
HOXC9P31274 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC6.64□□□□□ -1.35
HOXC9P31274 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC6.64□□□□□ -1.35
HOXC9P31274 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC6.64□□□□□ -1.35
HOXC9P31274 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
HOXC9P31274 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC6.64□□□□□ -1.35
HOXC9P31274 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
HOXC9P31274 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC6.64□□□□□ -1.35
HOXC9P31274 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.64□□□□□ -1.35
HOXC9P31274 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
HOXC9P31274 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
HOXC9P31274 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.63□□□□□ -1.35
HOXC9P31274 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
HOXC9P31274 IL6-206ENST00000407492 926 ntTSL 3 BASIC6.63□□□□□ -1.35
HOXC9P31274 RSU1P3-201ENST00000412878 835 ntBASIC6.63□□□□□ -1.35
HOXC9P31274 AL158827.1-201ENST00000416300 391 ntBASIC6.63□□□□□ -1.35
HOXC9P31274 HYALP1-201ENST00000417674 1279 ntBASIC6.63□□□□□ -1.35
HOXC9P31274 AC092017.2-201ENST00000427600 362 ntBASIC6.63□□□□□ -1.35
HOXC9P31274 OR2B7P-201ENST00000429302 934 ntBASIC6.63□□□□□ -1.35
HOXC9P31274 NRBF2P3-201ENST00000432731 865 ntBASIC6.63□□□□□ -1.35
HOXC9P31274 NAP1L4P3-201ENST00000432820 1147 ntBASIC6.63□□□□□ -1.35
HOXC9P31274 AC005154.2-201ENST00000438110 379 ntBASIC6.63□□□□□ -1.35
HOXC9P31274 AL450023.3-201ENST00000440592 271 ntBASIC6.63□□□□□ -1.35
HOXC9P31274 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC6.63□□□□□ -1.35
HOXC9P31274 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.63□□□□□ -1.35
HOXC9P31274 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC6.63□□□□□ -1.35
HOXC9P31274 RN7SKP276-201ENST00000516242 268 ntBASIC6.63□□□□□ -1.35
HOXC9P31274 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.63□□□□□ -1.35
HOXC9P31274 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC6.63□□□□□ -1.35
HOXC9P31274 TVP23CP2-201ENST00000571473 623 ntBASIC6.63□□□□□ -1.35
HOXC9P31274 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC6.63□□□□□ -1.35
HOXC9P31274 RN7SL290P-201ENST00000578661 300 ntBASIC6.63□□□□□ -1.35
HOXC9P31274 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC6.63□□□□□ -1.35
HOXC9P31274 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
HOXC9P31274 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
HOXC9P31274 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
HOXC9P31274 TEK-205ENST00000615002 4666 ntTSL 5 BASIC6.62□□□□□ -1.35
HOXC9P31274 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC6.62□□□□□ -1.35
HOXC9P31274 AC093829.1-201ENST00000506662 1618 ntBASIC6.62□□□□□ -1.35
HOXC9P31274 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC6.62□□□□□ -1.35
HOXC9P31274 ECM1P2-201ENST00000503354 1577 ntBASIC6.62□□□□□ -1.35
HOXC9P31274 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
HOXC9P31274 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
HOXC9P31274 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
HOXC9P31274 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC6.62□□□□□ -1.35
HOXC9P31274 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC6.62□□□□□ -1.35
HOXC9P31274 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
HOXC9P31274 RNA5SP241-201ENST00000391326 114 ntBASIC6.62□□□□□ -1.35
HOXC9P31274 BX510359.2-201ENST00000417920 305 ntBASIC6.62□□□□□ -1.35
HOXC9P31274 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC6.62□□□□□ -1.35
HOXC9P31274 AC010326.1-201ENST00000462726 602 ntBASIC6.62□□□□□ -1.35
HOXC9P31274 SOX5P1-201ENST00000524155 1127 ntBASIC6.62□□□□□ -1.35
HOXC9P31274 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
HOXC9P31274 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.62□□□□□ -1.35
HOXC9P31274 AC018558.5-201ENST00000565840 952 ntBASIC6.62□□□□□ -1.35
HOXC9P31274 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC6.62□□□□□ -1.35
HOXC9P31274 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC6.62□□□□□ -1.35
HOXC9P31274 CR381572.2-201ENST00000624852 397 ntBASIC6.62□□□□□ -1.35
HOXC9P31274 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC6.62□□□□□ -1.35
HOXC9P31274 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms