Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC068446.1-201ENST00000556425 1549 ntBASIC6.61□□□□□ -1.35
COL3A1P02461 NPM1P5-201ENST00000557228 838 ntBASIC6.61□□□□□ -1.35
COL3A1P02461 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC6.61□□□□□ -1.35
COL3A1P02461 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC6.61□□□□□ -1.35
COL3A1P02461 AC084782.3-201ENST00000612282 578 ntBASIC6.61□□□□□ -1.35
COL3A1P02461 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
COL3A1P02461 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.61□□□□□ -1.35
COL3A1P02461 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
COL3A1P02461 ADAM5-202ENST00000399789 1942 ntBASIC6.61□□□□□ -1.35
COL3A1P02461 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL3A1P02461 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL3A1P02461 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL3A1P02461 AC009643.2-201ENST00000603543 1448 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL3A1P02461 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC6.6□□□□□ -1.35
COL3A1P02461 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC6.6□□□□□ -1.35
COL3A1P02461 RNA5SP191-201ENST00000362585 102 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.6□□□□□ -1.35
COL3A1P02461 RPL21P67-201ENST00000402896 478 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL3A1P02461 RSU1P3-201ENST00000412878 835 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC6.6□□□□□ -1.35
COL3A1P02461 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL3A1P02461 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.6□□□□□ -1.35
COL3A1P02461 AC092017.2-201ENST00000427600 362 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC6.6□□□□□ -1.35
COL3A1P02461 AC008072.1-201ENST00000434254 824 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 Z80107.2-201ENST00000445127 392 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 AL353718.1-201ENST00000451028 517 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL3A1P02461 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC6.6□□□□□ -1.35
COL3A1P02461 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC6.6□□□□□ -1.35
COL3A1P02461 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC6.6□□□□□ -1.35
COL3A1P02461 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC6.6□□□□□ -1.35
COL3A1P02461 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.6□□□□□ -1.35
COL3A1P02461 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
COL3A1P02461 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC6.6□□□□□ -1.35
COL3A1P02461 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
COL3A1P02461 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC6.6□□□□□ -1.35
COL3A1P02461 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL3A1P02461 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL3A1P02461 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
COL3A1P02461 AL357515.1-201ENST00000402967 542 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC6.6□□□□□ -1.35
COL3A1P02461 TBCAP2-201ENST00000416175 326 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL3A1P02461 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC6.6□□□□□ -1.35
COL3A1P02461 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC6.6□□□□□ -1.35
COL3A1P02461 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC6.6□□□□□ -1.35
COL3A1P02461 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.6□□□□□ -1.35
COL3A1P02461 RPL21P133-201ENST00000443666 476 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC6.6□□□□□ -1.35
COL3A1P02461 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.6□□□□□ -1.35
COL3A1P02461 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL3A1P02461 NDUFB4P11-201ENST00000560510 395 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 UBE2FP2-201ENST00000566646 462 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 AP005901.4-201ENST00000577336 569 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 MIR4480-201ENST00000582492 71 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC6.6□□□□□ -1.35
COL3A1P02461 AP000484.1-201ENST00000620067 1252 ntBASIC6.6□□□□□ -1.35
COL3A1P02461 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC6.6□□□□□ -1.35
COL3A1P02461 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL3A1P02461 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL3A1P02461 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL3A1P02461 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL3A1P02461 AC011447.7-201ENST00000624228 1590 ntBASIC6.59□□□□□ -1.35
COL3A1P02461 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL3A1P02461 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL3A1P02461 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL3A1P02461 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.59□□□□□ -1.35
COL3A1P02461 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
COL3A1P02461 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC6.59□□□□□ -1.36
COL3A1P02461 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL3A1P02461 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC6.59□□□□□ -1.36
COL3A1P02461 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC6.59□□□□□ -1.36
COL3A1P02461 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC6.59□□□□□ -1.36
COL3A1P02461 AC073052.1-201ENST00000440417 714 ntBASIC6.59□□□□□ -1.36
COL3A1P02461 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC6.59□□□□□ -1.36
COL3A1P02461 AC063943.1-201ENST00000465434 453 ntBASIC6.59□□□□□ -1.36
COL3A1P02461 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC6.59□□□□□ -1.36
COL3A1P02461 AL671862.1-201ENST00000515851 349 ntBASIC6.59□□□□□ -1.36
COL3A1P02461 MTND1P6-201ENST00000523621 946 ntBASIC6.59□□□□□ -1.36
COL3A1P02461 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL3A1P02461 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL3A1P02461 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC6.59□□□□□ -1.36
COL3A1P02461 BGLT3-201ENST00000564523 994 ntBASIC6.59□□□□□ -1.36
COL3A1P02461 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC6.59□□□□□ -1.36
COL3A1P02461 AC027216.1-201ENST00000577726 685 ntBASIC6.59□□□□□ -1.36
COL3A1P02461 MIR3934-201ENST00000579806 107 ntBASIC6.59□□□□□ -1.36
COL3A1P02461 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC6.59□□□□□ -1.36
COL3A1P02461 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL3A1P02461 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC6.59□□□□□ -1.36
COL3A1P02461 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC6.58□□□□□ -1.36
COL3A1P02461 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL3A1P02461 AL031123.3-201ENST00000623345 1837 ntBASIC6.58□□□□□ -1.36
COL3A1P02461 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL3A1P02461 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL3A1P02461 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
COL3A1P02461 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms