Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 YWHABP2-201ENST00000540201 713 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 AL390334.1-201ENST00000556395 450 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 RBM22P12-201ENST00000567098 1255 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 MIR3176-201ENST00000582210 90 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 AC060766.1-201ENST00000590824 627 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 FO393422.1-201ENST00000603908 708 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 SNORD91B-202ENST00000608459 222 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 AC133552.1-201ENST00000569988 4007 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 SCARNA15-201ENST00000607520 4325 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 RNA5SP394-201ENST00000364216 119 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 TRGV5P-201ENST00000419915 354 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 COX6CP13-201ENST00000428703 226 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 AL445433.1-201ENST00000457507 257 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 AC090686.1-201ENST00000481577 749 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 ARL4AP1-201ENST00000503220 705 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 AC097173.1-201ENST00000505862 819 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 ENPP7P9-201ENST00000514456 627 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 RNA5SP362-201ENST00000516048 118 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 MIR4505-201ENST00000582238 73 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 RNF138P2-201ENST00000603490 592 ntBASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC112Q8NEF3 CASC19-221ENST00000641309 1382 ntBASIC5.65□□□□□ -1.51
CCDC112Q8NEF3 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC112Q8NEF3 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC112Q8NEF3 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 YES1P1-201ENST00000418510 1628 ntBASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 PRUNEP1-201ENST00000425846 705 ntBASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 LYPLA1P1-201ENST00000434514 622 ntBASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AC105399.1-202ENST00000447303 205 ntBASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AC110749.1-201ENST00000462007 357 ntBASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 HMGB1P19-201ENST00000517578 577 ntBASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 IGKV2-18-201ENST00000522607 343 ntBASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 EIF4A2P5-201ENST00000529914 499 ntBASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AC051619.2-201ENST00000559063 397 ntBASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 MIR4443-201ENST00000585052 53 ntBASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AC104695.2-201ENST00000605056 775 ntBASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AC020763.5-201ENST00000623298 430 ntBASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC112Q8NEF3 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC112Q8NEF3 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC112Q8NEF3 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC112Q8NEF3 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC112Q8NEF3 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC112Q8NEF3 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC112Q8NEF3 AL513548.1-201ENST00000562904 1724 ntBASIC5.63□□□□□ -1.51
CCDC112Q8NEF3 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms