Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FRG1DP-201ENST00000635586 771 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
SMARCA1P28370 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC6.42□□□□□ -1.38
SMARCA1P28370 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
SMARCA1P28370 CDC27P2-201ENST00000425026 1922 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
SMARCA1P28370 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SMARCA1P28370 CASC19-248ENST00000641674 1356 ntBASIC6.42□□□□□ -1.38
SMARCA1P28370 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC6.42□□□□□ -1.38
SMARCA1P28370 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SMARCA1P28370 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SMARCA1P28370 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SMARCA1P28370 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SMARCA1P28370 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.41□□□□□ -1.38
SMARCA1P28370 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SMARCA1P28370 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SMARCA1P28370 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SMARCA1P28370 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SMARCA1P28370 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SMARCA1P28370 RN7SKP199-201ENST00000410325 305 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AL158050.1-201ENST00000416077 457 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AC106883.1-201ENST00000418805 562 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SMARCA1P28370 AL606495.1-201ENST00000422100 813 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC6.41□□□□□ -1.38
SMARCA1P28370 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC6.41□□□□□ -1.38
SMARCA1P28370 AC012075.1-201ENST00000436549 580 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC6.41□□□□□ -1.38
SMARCA1P28370 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC6.41□□□□□ -1.38
SMARCA1P28370 AL627224.1-201ENST00000448334 444 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6.41□□□□□ -1.38
SMARCA1P28370 RN7SL583P-201ENST00000475692 287 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AC104982.1-201ENST00000478775 574 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AC090058.1-201ENST00000498788 435 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AC021087.2-201ENST00000504656 1203 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC6.41□□□□□ -1.38
SMARCA1P28370 MTND2P32-201ENST00000521584 1038 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC6.41□□□□□ -1.38
SMARCA1P28370 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC6.41□□□□□ -1.38
SMARCA1P28370 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC6.41□□□□□ -1.38
SMARCA1P28370 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SMARCA1P28370 AC009712.1-201ENST00000564938 316 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC6.41□□□□□ -1.38
SMARCA1P28370 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC6.41□□□□□ -1.38
SMARCA1P28370 AC013244.3-201ENST00000605614 388 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AC026741.1-201ENST00000605892 482 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC6.41□□□□□ -1.38
SMARCA1P28370 AL158062.1-201ENST00000619632 745 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AC090617.9-201ENST00000623751 147 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AC005618.4-201ENST00000625053 554 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 AC079776.5-201ENST00000641920 211 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 OR5AC4P-202ENST00000642086 985 ntBASIC6.41□□□□□ -1.38
SMARCA1P28370 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC6.41□□□□□ -1.38
SMARCA1P28370 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
SMARCA1P28370 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SMARCA1P28370 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC6.41□□□□□ -1.38
SMARCA1P28370 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
SMARCA1P28370 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
SMARCA1P28370 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SMARCA1P28370 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SMARCA1P28370 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
SMARCA1P28370 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
SMARCA1P28370 MIR16-2-201ENST00000362117 81 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SMARCA1P28370 RPL10P10-201ENST00000403509 664 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 OR3A2-201ENST00000408891 1076 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 MTCO2P8-201ENST00000412213 658 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 Z93019.1-201ENST00000416450 973 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 AL513325.1-201ENST00000417716 1034 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 MTCO2P23-201ENST00000425216 680 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 TRBV26OR9-2-201ENST00000432077 293 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 AC046176.1-201ENST00000435260 1170 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC6.4□□□□□ -1.38
SMARCA1P28370 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC6.4□□□□□ -1.38
SMARCA1P28370 RPS26P41-201ENST00000450370 284 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC6.4□□□□□ -1.38
SMARCA1P28370 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC6.4□□□□□ -1.38
SMARCA1P28370 PSAT1P4-201ENST00000466500 526 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SMARCA1P28370 AC090638.1-201ENST00000498296 909 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC6.4□□□□□ -1.38
SMARCA1P28370 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC6.4□□□□□ -1.38
SMARCA1P28370 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.4□□□□□ -1.38
SMARCA1P28370 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC6.4□□□□□ -1.38
SMARCA1P28370 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC6.4□□□□□ -1.38
SMARCA1P28370 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
SMARCA1P28370 MIR3176-201ENST00000582210 90 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 BNIP3P38-201ENST00000601117 544 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 XIST-210ENST00000602863 775 ntTSL 3 BASIC6.4□□□□□ -1.38
SMARCA1P28370 AC068313.1-201ENST00000604028 1008 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC6.4□□□□□ -1.38
SMARCA1P28370 AP005229.2-201ENST00000609980 697 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 AC008759.3-201ENST00000613300 508 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 AC084824.4-201ENST00000620106 731 ntBASIC6.4□□□□□ -1.38
SMARCA1P28370 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC6.4□□□□□ -1.38
SMARCA1P28370 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC6.4□□□□□ -1.39
SMARCA1P28370 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC6.4□□□□□ -1.39
SMARCA1P28370 AC140134.1-201ENST00000511830 3544 ntBASIC6.4□□□□□ -1.39
SMARCA1P28370 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.39
SMARCA1P28370 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms