Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.92□□□□□ -1.62
HOXD4P09016 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXD4P09016 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXD4P09016 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.92□□□□□ -1.62
HOXD4P09016 DSTNP5-201ENST00000427921 523 ntBASIC4.92□□□□□ -1.62
HOXD4P09016 VN1R54P-201ENST00000435210 1049 ntBASIC4.92□□□□□ -1.62
HOXD4P09016 BTBD7P2-201ENST00000441962 620 ntBASIC4.92□□□□□ -1.62
HOXD4P09016 FAR2P1-206ENST00000449736 709 ntBASIC4.92□□□□□ -1.62
HOXD4P09016 OR52Y1P-201ENST00000452418 828 ntBASIC4.92□□□□□ -1.62
HOXD4P09016 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC4.92□□□□□ -1.62
HOXD4P09016 RN7SL97P-201ENST00000486780 299 ntBASIC4.92□□□□□ -1.62
HOXD4P09016 AL133372.1-201ENST00000493565 745 ntBASIC4.92□□□□□ -1.62
HOXD4P09016 RN7SL808P-201ENST00000496066 299 ntBASIC4.92□□□□□ -1.62
HOXD4P09016 AC147055.1-201ENST00000509261 750 ntBASIC4.92□□□□□ -1.62
HOXD4P09016 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXD4P09016 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXD4P09016 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXD4P09016 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXD4P09016 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.92□□□□□ -1.62
HOXD4P09016 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXD4P09016 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXD4P09016 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXD4P09016 AC087468.1-201ENST00000604365 630 ntBASIC4.92□□□□□ -1.62
HOXD4P09016 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC4.92□□□□□ -1.62
HOXD4P09016 MIR6748-201ENST00000610433 71 ntBASIC4.92□□□□□ -1.62
HOXD4P09016 AC090510.2-201ENST00000617465 629 ntBASIC4.92□□□□□ -1.62
HOXD4P09016 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXD4P09016 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HOXD4P09016 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HOXD4P09016 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXD4P09016 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
HOXD4P09016 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXD4P09016 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXD4P09016 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXD4P09016 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXD4P09016 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HOXD4P09016 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
HOXD4P09016 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HOXD4P09016 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXD4P09016 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.92□□□□□ -1.62
HOXD4P09016 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HOXD4P09016 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HOXD4P09016 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
HOXD4P09016 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 MAPK10-349ENST00000641767 3661 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXD4P09016 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXD4P09016 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
HOXD4P09016 MTHFD2P5-201ENST00000320415 844 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 RNU4-44P-201ENST00000363050 141 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 U8.4-201ENST00000363626 134 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 AL645733.1-201ENST00000402250 217 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 RPL37P18-201ENST00000411602 243 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 RBMY2KP-201ENST00000418221 992 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 FAM204CP-201ENST00000424489 642 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 RIMKLBP2-201ENST00000424737 654 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 AC009784.1-201ENST00000426484 460 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.91□□□□□ -1.62
HOXD4P09016 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC4.91□□□□□ -1.62
HOXD4P09016 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXD4P09016 NPM1P33-201ENST00000438918 872 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 AC245047.2-201ENST00000441060 530 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 NDUFB5P1-201ENST00000508134 564 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 MTND6P2-201ENST00000512226 524 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 OR5D15P-201ENST00000531671 942 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.91□□□□□ -1.62
HOXD4P09016 ASB8-202ENST00000535055 657 ntTSL 2 BASIC4.91□□□□□ -1.62
HOXD4P09016 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC4.91□□□□□ -1.62
HOXD4P09016 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC4.91□□□□□ -1.62
HOXD4P09016 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
HOXD4P09016 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
HOXD4P09016 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXD4P09016 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXD4P09016 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXD4P09016 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC4.91□□□□□ -1.62
HOXD4P09016 AL391597.1-201ENST00000618707 694 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.91□□□□□ -1.62
HOXD4P09016 OR4F13P-202ENST00000560066 2054 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 AL513548.1-201ENST00000562904 1724 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.91□□□□□ -1.62
HOXD4P09016 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
HOXD4P09016 AL022311.1-201ENST00000623726 19416 ntBASIC4.91□□□□□ -1.62
HOXD4P09016 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
HOXD4P09016 RBPJP2-201ENST00000618187 1444 ntBASIC4.9□□□□□ -1.62
HOXD4P09016 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC4.9□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms