Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LMX1BO60663 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LMX1BO60663 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LMX1BO60663 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
LMX1BO60663 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LMX1BO60663 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.87□□□□□ -1.63
LMX1BO60663 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.87□□□□□ -1.63
LMX1BO60663 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC4.86□□□□□ -1.63
LMX1BO60663 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC4.86□□□□□ -1.63
LMX1BO60663 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC4.86□□□□□ -1.63
LMX1BO60663 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 SNORA70-201ENST00000384436 135 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
LMX1BO60663 AC017078.1-201ENST00000416146 368 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 NENFP1-201ENST00000419476 466 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AC007394.1-201ENST00000421941 531 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 NANOGP4-201ENST00000427230 913 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 HMGB3P5-201ENST00000428894 612 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 HMGB3P24-201ENST00000433260 622 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC4.86□□□□□ -1.63
LMX1BO60663 ELOCP3-201ENST00000439303 348 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 NANOGP9-201ENST00000439890 892 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 RRM2P4-201ENST00000441721 562 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 TXNP2-201ENST00000443918 295 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.86□□□□□ -1.63
LMX1BO60663 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC4.86□□□□□ -1.63
LMX1BO60663 MTCYBP11-201ENST00000447254 1109 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC4.86□□□□□ -1.63
LMX1BO60663 RN7SL570P-201ENST00000484405 292 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC4.86□□□□□ -1.63
LMX1BO60663 RPL23AP73-201ENST00000492507 471 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC4.86□□□□□ -1.63
LMX1BO60663 RPEP1-201ENST00000504507 658 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 NAMPTP2-201ENST00000505629 1115 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC4.86□□□□□ -1.63
LMX1BO60663 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC4.86□□□□□ -1.63
LMX1BO60663 RNU6-615P-201ENST00000516065 106 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC4.86□□□□□ -1.63
LMX1BO60663 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC4.86□□□□□ -1.63
LMX1BO60663 OR4A17P-201ENST00000526032 904 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 OR7E10P-201ENST00000526420 991 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC4.86□□□□□ -1.63
LMX1BO60663 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC4.86□□□□□ -1.63
LMX1BO60663 AC084759.1-201ENST00000561168 290 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC4.86□□□□□ -1.63
LMX1BO60663 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.86□□□□□ -1.63
LMX1BO60663 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.86□□□□□ -1.63
LMX1BO60663 MIR4260-201ENST00000583107 67 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC4.86□□□□□ -1.63
LMX1BO60663 HCG18-243ENST00000602498 327 ntTSL 3 BASIC4.86□□□□□ -1.63
LMX1BO60663 AC096586.2-201ENST00000610260 441 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AC097478.2-201ENST00000610572 514 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AC010632.3-201ENST00000611377 369 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AC008115.3-201ENST00000614874 549 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AC140725.3-201ENST00000616193 880 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AC016769.4-201ENST00000616893 535 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC4.86□□□□□ -1.63
LMX1BO60663 AC073342.3-201ENST00000624211 193 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 AC013437.2-201ENST00000639587 677 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 ATP5A1P1-201ENST00000454088 1321 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
LMX1BO60663 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
LMX1BO60663 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.86□□□□□ -1.63
LMX1BO60663 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
LMX1BO60663 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC4.86□□□□□ -1.63
LMX1BO60663 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
LMX1BO60663 AL078595.2-201ENST00000605309 1780 ntBASIC4.86□□□□□ -1.63
LMX1BO60663 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LMX1BO60663 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LMX1BO60663 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
LMX1BO60663 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LMX1BO60663 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LMX1BO60663 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LMX1BO60663 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LMX1BO60663 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LMX1BO60663 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC4.85□□□□□ -1.63
LMX1BO60663 RNA5SP30-201ENST00000365552 115 ntBASIC4.85□□□□□ -1.63
LMX1BO60663 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
LMX1BO60663 AL391422.1-201ENST00000402155 436 ntBASIC4.85□□□□□ -1.63
LMX1BO60663 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC4.85□□□□□ -1.63
LMX1BO60663 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC4.85□□□□□ -1.63
LMX1BO60663 OR6E1P-201ENST00000414424 923 ntBASIC4.85□□□□□ -1.63
LMX1BO60663 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC4.85□□□□□ -1.63
LMX1BO60663 AC106883.1-201ENST00000418805 562 ntBASIC4.85□□□□□ -1.63
LMX1BO60663 AL121882.1-201ENST00000422893 417 ntBASIC4.85□□□□□ -1.63
LMX1BO60663 MTND4P24-201ENST00000424002 397 ntBASIC4.85□□□□□ -1.63
LMX1BO60663 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms